PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75201-75250 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9899 | 11 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.9290 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.2857 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8235 | 97.6744 | 100.0000 | 54.6263 | 252 | 6 | 255 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.0557 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.0305 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.2806 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.2620 | 98.5348 | 100.0000 | 70.7344 | 538 | 8 | 530 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4550 | 98.9160 | 100.0000 | 75.9184 | 365 | 4 | 354 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7686 | 99.5382 | 100.0000 | 50.6863 | 10131 | 47 | 10095 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9981 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9884 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6029 | 99.2089 | 100.0000 | 43.0390 | 3637 | 29 | 3625 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8494 | 99.6992 | 100.0000 | 33.0461 | 1326 | 4 | 1321 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.5517 | 93.3333 | 100.0000 | 56.3636 | 70 | 5 | 72 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 81.9277 | 13 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 27.8689 | 44 | 5 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.0952 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.5107 | 96.1083 | 98.9547 | 73.4013 | 568 | 23 | 568 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.7198 | 12 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | het | 97.9933 | 97.0223 | 98.9839 | 74.5035 | 1173 | 36 | 1169 | 12 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 90.6977 | 82.9787 | 100.0000 | 93.6027 | 39 | 8 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 93.7600 | 40 | 8 | 39 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 91.4894 | 84.3137 | 100.0000 | 93.4066 | 43 | 8 | 42 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0335 | 94.7826 | 99.3939 | 76.8908 | 327 | 18 | 328 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3607 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8418 | 96.6942 | 99.0169 | 76.5404 | 702 | 24 | 705 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 97.2973 | 11 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9502 | 96.8586 | 99.0667 | 78.0059 | 740 | 24 | 743 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 97.2906 | 12 | 3 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9023 | 96.8831 | 98.9432 | 78.1087 | 746 | 24 | 749 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 97.3366 | 12 | 3 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | het | 95.9235 | 93.0693 | 98.9583 | 81.3230 | 188 | 14 | 190 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6111 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.5790 | 96.0581 | 99.1489 | 78.9615 | 463 | 19 | 466 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.6348 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.7334 | 96.3035 | 99.2063 | 80.3967 | 495 | 19 | 500 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.7539 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.6691 | 96.1686 | 99.2172 | 80.3989 | 502 | 20 | 507 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 98.4756 | 6 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.0233 | 86.9565 | 100.0000 | 94.9068 | 40 | 6 | 41 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m0_e0 | het | 93.5484 | 87.8788 | 100.0000 | 93.2127 | 29 | 4 | 30 | 0 | 0 | ||