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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
701-750 / 86044 show all
mlin-fermikitSNP*map_l125_m2_e1*
63.8417
50.2034
87.6540
61.8934
23697235052369233372934
87.9233
ciseli-customINDELI6_15HG002compoundhet*
2.2462
1.5497
4.0797
35.3639
136864012930332934
96.7359
mlin-fermikitSNP*map_l125_m2_e1homalt
66.2819
58.2991
76.7977
57.4167
1022173111022130882926
94.7539
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
84.4279
81.5933
87.4666
33.3286
2002345172060129522912
98.6450
mlin-fermikitSNP*map_l125_m2_e0*
63.6201
49.9497
87.5929
61.7303
23338233852333333052908
87.9879
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
84.3874
97.5345
74.3636
48.4035
8189207867629912903
97.0578
mlin-fermikitSNP*map_l125_m2_e0homalt
66.1120
58.0777
76.7260
57.2932
1009172841009130612900
94.7403
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.0202
97.6165
72.2212
39.7852
7208176769329592890
97.6681
anovak-vgINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
50.6371
40.3001
68.1066
40.7912
23103422674831602890
91.4557
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
51.0479
89.1961
35.7556
37.7138
1742211173231122889
92.8342
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
60.5607
55.5947
66.5009
43.6531
61614921601930322878
94.9208
ciseli-customSNPtvHG002complexvar*
94.9824
96.7736
93.2564
24.4003
2382137942236085170722875
16.8404
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
72.8639
81.3378
65.9890
43.5053
2663611587530282874
94.9141
mlin-fermikitSNP*map_l125_m1_e0*
62.6787
48.9002
87.2681
57.2976
22165231622216032332859
88.4318
mlin-fermikitSNP*map_l125_m1_e0homalt
65.3755
57.2079
76.2637
52.9793
96717234967130102851
94.7176
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
47.9368
36.5290
69.7055
72.0207
22293873913739712851
71.7955
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
70.1135
58.5834
87.2943
32.4261
335823741978728802850
98.9583
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
58.5321
47.8735
75.2959
43.8204
25442770871428592841
99.3704
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
91.1270
87.3774
95.2128
60.8815
5710282496396332162822
87.7488
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
91.1270
87.3774
95.2128
60.8815
5710282496396332162822
87.7488
anovak-vgSNP*map_l125_m2_e1*
81.3800
87.2421
76.2560
76.1127
41180602240707126752820
22.2485
gduggal-snapplatSNP***
99.0030
98.6815
99.3266
26.8746
3014360402743015151204422819
13.7902
anovak-vgSNP*map_l125_m2_e0*
81.2942
87.1691
76.1613
76.0893
40728599540268126042812
22.3104
gduggal-snapfbINDELI6_15**
76.3979
68.7024
86.0349
35.3787
1705477691778628872798
96.9172
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
63.5703
52.8321
79.7871
32.1688
313427981109228102788
99.2171
qzeng-customINDEL*HG002compoundhethet
90.0667
93.8691
86.5604
55.7571
38432513009146722782
59.5462
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
70.2794
91.7657
56.9459
43.6183
108197371828112776
98.7549
anovak-vgSNP*map_l125_m1_e0*
81.0489
87.0673
75.8087
74.5245
39465586239018124512766
22.2151
anovak-vgINDELD1_5HG002compoundhethet
54.0229
57.5810
50.8790
62.2806
995733442842752764
64.6550
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
67.1072
91.8336
52.8714
33.4573
59653312127822751
98.8857
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.9804
93.5841
96.4190
67.2497
4517430977967229592749
92.9030
ciseli-customSNP*map_sirenhomalt
93.3935
93.4404
93.3467
52.8475
5153836185121036502749
75.3151
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.3079
82.7701
83.8526
37.1677
1511331461517929232748
94.0130
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
84.1727
99.6274
72.8688
27.5370
722027739427532746
99.7457
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
56.5143
51.2341
63.0078
48.1760
48784643603335422746
77.5268
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50het
76.1186
81.3959
71.4838
54.5214
1282829321348953812743
50.9757
ckim-isaacINDEL*HG002compoundhethet
56.9247
80.6302
43.9912
64.9439
3301793240530622738
89.4187
anovak-vgSNP*map_l125_m2_e1het
77.5666
90.5162
67.8585
78.1432
26829281126551125762737
21.7637
ciseli-customINDEL*HG002complexvarhet
83.6520
81.8863
85.4955
58.3237
3783883703801964502732
42.3566
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
74.5124
79.7221
69.9419
60.7095
998225391071346042731
59.3180
anovak-vgSNP*map_l125_m2_e0het
77.4707
90.4768
67.7339
78.1138
26526279226255125072731
21.8358
gduggal-snapplatINDEL*HG002compoundhethomalt
27.3298
63.4111
17.4185
67.5742
43525166831672730
86.2015
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
85.8009
91.8776
80.4781
48.4090
1150410171137827602725
98.7319
qzeng-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.3917
97.6114
95.2022
68.9543
4711811539853949662712
54.6114
jlack-gatkINDEL***
98.6899
98.8138
98.5664
60.1151
340455408734033249502708
54.7071
gduggal-bwafbINDEL**homalt
98.0353
98.2688
97.8029
56.6087
123005216712299127632706
97.9370
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.7905
46.8317
46.7493
53.6445
18922148309235222706
76.8313
anovak-vgSNP*map_l125_m1_e0het
77.1793
90.4691
67.2939
76.7918
25686270625425123572688
21.7529
jpowers-varprowlSNP***
99.5004
99.5447
99.4561
23.3348
3040706139083041157166322670
16.0534
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
47.1342
38.1966
61.5321
37.8247
26394270521332592660
81.6201