PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74051-74100 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 25.1397 | 100.0000 | 45 | 134 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 80.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.5630 | 93.3544 | 100.0000 | 65.8940 | 295 | 21 | 412 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.9744 | 0 | 1 | 0 | 19 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 99.9713 | 0 | 0 | 0 | 14 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 99.9783 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.4883 | 73.2719 | 80.0000 | 75.0000 | 159 | 58 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 86.3636 | 76.0000 | 100.0000 | 78.9474 | 19 | 6 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 78.2609 | 100.0000 | 18 | 5 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.1739 | 6 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 87.1795 | 77.2727 | 100.0000 | 89.4180 | 34 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 87.1795 | 77.2727 | 100.0000 | 90.2439 | 34 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 90.4306 | 35 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.6292 | 2 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 86.6667 | 76.4706 | 100.0000 | 91.4474 | 13 | 4 | 13 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 88.2353 | 78.9474 | 100.0000 | 91.7160 | 15 | 4 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 88.2353 | 78.9474 | 100.0000 | 91.8605 | 15 | 4 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 95.0820 | 5 | 4 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 94.8529 | 5 | 4 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.8905 | 6 | 4 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.4979 | 3 | 6 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7654 | 1 | 1 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 59.6512 | 43.1818 | 96.4286 | 96.5895 | 19 | 25 | 27 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 1 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 60.9137 | 44.4444 | 96.7742 | 96.6559 | 20 | 25 | 30 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.6292 | 1 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 62.0591 | 45.6522 | 96.8750 | 96.6562 | 21 | 25 | 31 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_siren | hetalt | 88.0000 | 78.5714 | 100.0000 | 86.0806 | 88 | 24 | 38 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | segdup | hetalt | 90.9091 | 83.3333 | 100.0000 | 95.9128 | 40 | 8 | 15 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 55.8140 | 22 | 0 | 19 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 53.3333 | 8 | 0 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.6923 | 13 | 0 | 11 | 0 | 0 | ||