PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73851-73900 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 80.6665 | 100.0000 | 5737 | 1375 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 85.1600 | 0.0000 | 0.0000 | 4631 | 807 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 80.6384 | 100.0000 | 5785 | 1389 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 81.4493 | 100.0000 | 6564 | 1495 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 83.8433 | 0.0000 | 0.0000 | 4001 | 771 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 43.4633 | 100.0000 | 379 | 493 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.7838 | 100.0000 | 31 | 6 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.9858 | 100.0000 | 57.4627 | 71.8487 | 74 | 0 | 77 | 57 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.9167 | 73.6842 | 56.4356 | 98.6567 | 42 | 15 | 57 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 68.3576 | 78.5714 | 60.4938 | 98.6745 | 33 | 9 | 49 | 32 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 54.0541 | 83.3333 | 40.0000 | 98.5795 | 5 | 1 | 8 | 12 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 92.9780 | 0.0000 | 0.0000 | 1099 | 83 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 82.0933 | 0.0000 | 0.0000 | 651 | 142 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 97.0890 | 0.0000 | 0.0000 | 567 | 17 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 75.2577 | 0.0000 | 0.0000 | 73 | 24 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 79.4118 | 0.0000 | 0.0000 | 54 | 14 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 79.4118 | 0.0000 | 0.0000 | 54 | 14 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 78.0822 | 0.0000 | 0.0000 | 57 | 16 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 83.3333 | 0.0000 | 0.0000 | 5 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 85.0000 | 0.0000 | 0.0000 | 17 | 3 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 4 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 77.7778 | 0.0000 | 0.0000 | 7 | 2 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.5309 | 1 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 52.1739 | 40.0000 | 75.0000 | 96.4602 | 2 | 3 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 61.5385 | 50.0000 | 80.0000 | 96.2963 | 3 | 3 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 96.4286 | 3 | 3 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 82.8283 | 0.0000 | 0.0000 | 82 | 17 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 81.6327 | 0.0000 | 0.0000 | 40 | 9 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||