PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73751-73800 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 21.2766 | 74 | 0 | 74 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.6963 | 66.2459 | 100.0000 | 93.7500 | 1207 | 615 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.6674 | 10 | 1 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 99.7253 | 7 | 1 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.4100 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.5939 | 86.2091 | 100.0000 | 89.7909 | 8014 | 1282 | 83 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.2681 | 82.2624 | 100.0000 | 94.4664 | 7643 | 1648 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.8049 | 78.2609 | 100.0000 | 87.5000 | 54 | 15 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.7368 | 90.0000 | 100.0000 | 99.7088 | 9 | 1 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 92.3077 | 85.7143 | 100.0000 | 99.7823 | 6 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.3939 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.7746 | 91.8919 | 100.0000 | 95.3846 | 68 | 6 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.7746 | 91.8919 | 100.0000 | 95.0000 | 34 | 3 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 64.9109 | 100.0000 | 838 | 453 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9011 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7805 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 89.5484 | 81.0747 | 100.0000 | 93.6170 | 6563 | 1532 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 91.3158 | 84.0193 | 100.0000 | 93.1818 | 5736 | 1091 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.5167 | 81.0229 | 100.0000 | 94.3548 | 6622 | 1551 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.2681 | 82.2624 | 100.0000 | 94.4664 | 7643 | 1648 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 91.5505 | 84.4177 | 100.0000 | 89.0909 | 5813 | 1073 | 12 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 27.9022 | 100.0000 | 137 | 354 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.3783 | 94.8905 | 100.0000 | 85.0000 | 390 | 21 | 51 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.7853 | 93.7709 | 100.0000 | 79.8165 | 1400 | 93 | 22 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 80.1538 | 100.0000 | 521 | 129 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.3498 | 96.7532 | 100.0000 | 68.3333 | 447 | 15 | 19 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 79.5918 | 0.0000 | 0.0000 | 39 | 10 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 57.5758 | 13 | 0 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 85.7143 | 100.0000 | 12 | 2 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 89.4118 | 80.8511 | 100.0000 | 95.5556 | 38 | 9 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 88.3721 | 79.1667 | 100.0000 | 96.0784 | 38 | 10 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 89.1304 | 80.3922 | 100.0000 | 96.0784 | 41 | 10 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||