PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73701-73750 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 47.0588 | 100.0000 | 30.7692 | 98.1716 | 4 | 0 | 4 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 60.0000 | 100.0000 | 42.8571 | 98.8553 | 7 | 0 | 6 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 71.4286 | 100.0000 | 55.5556 | 98.6861 | 7 | 0 | 5 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.0706 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 66.4395 | 92.8571 | 51.7241 | 96.7232 | 13 | 1 | 15 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.1497 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 66.4481 | 94.1176 | 51.3514 | 97.6206 | 16 | 1 | 19 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 70.3125 | 93.7500 | 56.2500 | 96.6066 | 15 | 1 | 18 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.1830 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 64.0000 | 88.8889 | 50.0000 | 97.5719 | 16 | 2 | 19 | 19 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e1 | het | 68.9655 | 93.7500 | 54.5455 | 96.5300 | 15 | 1 | 18 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 20.0000 | 99.1857 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.7452 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 99.5192 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 57.1429 | 100.0000 | 40.0000 | 99.0566 | 4 | 0 | 4 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.6577 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 99.5690 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 62.5000 | 100.0000 | 45.4545 | 99.0081 | 5 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.7362 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 50.0000 | 100.0000 | 33.3333 | 99.3697 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 62.5000 | 100.0000 | 45.4545 | 99.0152 | 5 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.7461 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 50.0000 | 100.0000 | 33.3333 | 99.3737 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 74.1935 | 0.0000 | 0.0000 | 23 | 8 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | hetalt | 91.1048 | 83.6629 | 100.0000 | 61.9355 | 8547 | 1669 | 177 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9825 | 4 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9795 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | func_cds | * | 99.0536 | 100.0000 | 98.1250 | 39.8496 | 159 | 0 | 157 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | func_cds | het | 98.2249 | 100.0000 | 96.5116 | 50.0000 | 85 | 0 | 83 | 3 | 0 | 0.0000 | |