PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72851-72900 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 77.4194 | 63.1579 | 100.0000 | 89.9160 | 12 | 7 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | het | 43.7956 | 28.3019 | 96.7742 | 87.6984 | 30 | 76 | 30 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.5455 | 3 | 6 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 95.7143 | 3 | 6 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 94.5946 | 4 | 6 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | het | 31.5789 | 20.0000 | 75.0000 | 95.5556 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | het | 47.5000 | 31.6667 | 95.0000 | 92.8826 | 19 | 41 | 19 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | het | 49.4382 | 33.3333 | 95.6522 | 93.9314 | 22 | 44 | 22 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | het | 49.4382 | 33.3333 | 95.6522 | 94.1176 | 22 | 44 | 22 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_siren | hetalt | 82.7225 | 70.5357 | 100.0000 | 83.1169 | 79 | 33 | 78 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | segdup | hetalt | 84.3373 | 72.9167 | 100.0000 | 94.9791 | 35 | 13 | 36 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 43.5897 | 22 | 0 | 22 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 8 | 0 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 48.0000 | 13 | 0 | 13 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 2 | 2 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 15 | 0 | 15 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 79.0698 | 65.3846 | 100.0000 | 61.5385 | 34 | 18 | 35 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 76.0563 | 61.3636 | 100.0000 | 74.2857 | 27 | 17 | 27 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 50.0000 | 100.0000 | 99.8797 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0826 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||