PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69951-70000 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 23.0769 | 100.0000 | 71.4286 | 3 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 89.0909 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.1429 | 69.6970 | 100.0000 | 83.8028 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.1429 | 69.6970 | 100.0000 | 85.8896 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.1429 | 69.6970 | 100.0000 | 86.3095 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5000 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 88.4211 | 11 | 4 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 89.9083 | 11 | 4 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | homalt | 84.6154 | 73.3333 | 100.0000 | 90.4348 | 11 | 4 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.7500 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m1_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 94.4444 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 95.2941 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e1 | homalt | 76.9231 | 62.5000 | 100.0000 | 94.5055 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.6903 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 93.4426 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.6522 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.0413 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 94.0299 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.8333 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | * | 91.6667 | 84.6154 | 100.0000 | 45.0000 | 11 | 2 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 45.4545 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | hetalt | 80.0000 | 66.6667 | 100.0000 | 33.3333 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||