PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6951-7000 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.5902 | 99.5017 | 84.8442 | 51.7430 | 599 | 3 | 599 | 107 | 106 | 99.0654 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8289 | 99.1468 | 98.5131 | 59.7388 | 7321 | 63 | 7288 | 110 | 106 | 96.3636 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.6403 | 99.3747 | 97.9167 | 72.3397 | 5562 | 35 | 5546 | 118 | 106 | 89.8305 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 62.3092 | 51.9728 | 77.7778 | 57.5400 | 382 | 353 | 392 | 112 | 106 | 94.6429 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | * | 84.9902 | 80.5843 | 89.9058 | 63.0348 | 1324 | 319 | 1336 | 150 | 106 | 70.6667 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | * | 65.1571 | 52.8145 | 85.0279 | 85.1378 | 760 | 679 | 761 | 134 | 106 | 79.1045 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7994 | 98.6540 | 98.9452 | 53.8867 | 10041 | 137 | 10037 | 107 | 106 | 99.0654 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 71.5746 | 78.1250 | 66.0377 | 64.7450 | 225 | 63 | 210 | 108 | 106 | 98.1481 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.2223 | 89.4397 | 79.5802 | 65.5942 | 415 | 49 | 417 | 107 | 106 | 99.0654 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.9832 | 96.0537 | 95.9128 | 70.7498 | 4576 | 188 | 4576 | 195 | 106 | 54.3590 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 87.9554 | 98.8166 | 79.2453 | 88.8008 | 501 | 6 | 504 | 132 | 106 | 80.3030 | |
| rpoplin-dv42 | SNP | ti | * | homalt | 99.9800 | 99.9747 | 99.9853 | 16.8487 | 802835 | 203 | 802832 | 118 | 106 | 89.8305 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | * | 93.9698 | 98.0635 | 90.2042 | 86.8496 | 11799 | 233 | 11796 | 1281 | 106 | 8.2748 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7158 | 99.7919 | 99.6397 | 70.7329 | 30697 | 64 | 30697 | 111 | 106 | 95.4955 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | * | 98.6835 | 99.2948 | 98.0797 | 66.8879 | 47593 | 338 | 47601 | 932 | 106 | 11.3734 | |
| ckim-gatk | INDEL | D16_PLUS | * | * | 97.7762 | 97.9953 | 97.5581 | 71.4634 | 6648 | 136 | 6632 | 166 | 106 | 63.8554 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1889 | 97.3395 | 97.0388 | 75.6563 | 4866 | 133 | 4850 | 148 | 106 | 71.6216 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1889 | 97.3395 | 97.0388 | 75.6563 | 4866 | 133 | 4850 | 148 | 106 | 71.6216 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 36.5732 | 34.6847 | 38.6792 | 60.6679 | 77 | 145 | 82 | 130 | 106 | 81.5385 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6175 | 96.0100 | 99.2797 | 41.3870 | 8061 | 335 | 16539 | 120 | 106 | 88.3333 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1374 | 97.6583 | 98.6213 | 37.9185 | 2669 | 64 | 8083 | 113 | 105 | 92.9204 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 53.5743 | 43.1856 | 70.5446 | 64.5614 | 263 | 346 | 285 | 119 | 105 | 88.2353 | |
| ckim-gatk | INDEL | D1_5 | HG002compoundhet | het | 96.2104 | 98.4375 | 94.0819 | 78.9081 | 1701 | 27 | 1701 | 107 | 105 | 98.1308 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.0854 | 93.2480 | 96.9966 | 62.0553 | 3715 | 269 | 3714 | 115 | 105 | 91.3043 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9346 | 99.2616 | 98.6098 | 64.3360 | 8334 | 62 | 8299 | 117 | 105 | 89.7436 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 53.2420 | 85.0543 | 38.7490 | 79.7595 | 939 | 165 | 985 | 1557 | 105 | 6.7437 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | homalt | 77.9222 | 74.8832 | 81.2183 | 87.6682 | 641 | 215 | 640 | 148 | 105 | 70.9459 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ckim-vqsr | INDEL | D1_5 | HG002compoundhet | het | 96.1223 | 98.2639 | 94.0720 | 78.9357 | 1698 | 30 | 1698 | 107 | 105 | 98.1308 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.0829 | 93.1978 | 97.0458 | 62.0799 | 3713 | 271 | 3712 | 113 | 105 | 92.9204 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8983 | 99.1544 | 98.6435 | 64.3687 | 8325 | 71 | 8290 | 114 | 105 | 92.1053 | |
| ckim-vqsr | INDEL | D16_PLUS | * | * | 97.9266 | 97.9363 | 97.9170 | 71.5505 | 6644 | 140 | 6628 | 141 | 105 | 74.4681 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 68.7500 | 83.7563 | 58.3039 | 53.7582 | 165 | 32 | 165 | 118 | 105 | 88.9831 | |
| gduggal-snapfb | INDEL | I6_15 | HG002compoundhet | hetalt | 70.7588 | 57.7252 | 91.3944 | 38.7805 | 4928 | 3609 | 1147 | 108 | 105 | 97.2222 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | het | 89.7380 | 98.4556 | 82.4387 | 88.3144 | 765 | 12 | 1075 | 229 | 105 | 45.8515 | |
| jpowers-varprowl | INDEL | I1_5 | map_siren | het | 93.3720 | 94.3486 | 92.4154 | 83.6731 | 1586 | 95 | 1584 | 130 | 105 | 80.7692 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.8422 | 99.9434 | 92.0643 | 68.8076 | 1766 | 1 | 1775 | 153 | 105 | 68.6275 | |
| gduggal-bwavard | INDEL | C1_5 | * | het | 77.2653 | 88.8889 | 68.3301 | 92.9553 | 8 | 1 | 1068 | 495 | 105 | 21.2121 | |
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | het | 82.2319 | 85.7143 | 79.0215 | 80.8462 | 6 | 1 | 1066 | 283 | 105 | 37.1025 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.3098 | 85.7592 | 86.8676 | 76.1917 | 819 | 136 | 807 | 122 | 105 | 86.0656 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.6122 | 99.4536 | 81.5431 | 79.4401 | 546 | 3 | 539 | 122 | 105 | 86.0656 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.5921 | 77.7149 | 97.7589 | 44.5846 | 5632 | 1615 | 5627 | 129 | 105 | 81.3953 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 87.6933 | 79.6065 | 97.6088 | 41.6096 | 4329 | 1109 | 4327 | 106 | 105 | 99.0566 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.3637 | 98.3285 | 94.4759 | 62.6464 | 9530 | 162 | 8500 | 497 | 105 | 21.1268 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8251 | 98.5087 | 93.2839 | 75.9171 | 6143 | 93 | 6167 | 444 | 105 | 23.6486 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 67.4506 | 68.3983 | 66.5289 | 66.7811 | 316 | 146 | 322 | 162 | 105 | 64.8148 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.0806 | 99.4197 | 96.7771 | 68.3987 | 3255 | 19 | 3243 | 108 | 105 | 97.2222 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.2533 | 95.0967 | 97.4383 | 65.3458 | 4228 | 218 | 4184 | 110 | 105 | 95.4545 | |
| jlack-gatk | INDEL | I6_15 | HG002compoundhet | het | 73.9198 | 96.6346 | 59.8513 | 81.3194 | 201 | 7 | 161 | 108 | 105 | 97.2222 | |