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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
651-700 / 86044 show all
gduggal-snapvardSNP**het
98.8907
98.9717
98.8098
27.4520
1854334192661842523221943216
14.4904
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
49.1325
41.4437
60.3241
51.4691
34854924606839913216
80.5813
mlin-fermikitINDELD1_5**
96.7247
95.7954
97.6723
56.1904
140575617014039933463212
95.9952
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
82.5425
81.8606
83.2358
38.5631
1686037361692634093210
94.1625
gduggal-bwavardSNP**het
99.2301
99.0784
99.3822
26.2938
1856334172671845056114693208
27.9711
gduggal-bwafbINDEL*HG002compoundhet*
86.4141
81.5955
91.8376
53.1940
2444655143787233663207
95.2763
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
53.4223
89.0717
38.1524
44.9605
2111259209834013202
94.1488
ndellapenna-hhgaINDELD1_5*het
97.6637
99.1299
96.2402
54.0039
868127628733734123186
93.3763
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
87.2098
85.2583
89.2527
52.9223
1693429282799533713181
94.3637
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.1349
97.1942
80.6205
57.4187
133713861390333423177
95.0628
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
88.1349
97.1942
80.6205
57.4187
133713861390333423177
95.0628
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
67.3074
57.8428
80.4752
45.6223
486435451344532623175
97.3329
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_11to50*
92.9935
92.8372
93.1502
44.3921
3397126215982243993170
72.0618
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.7746
98.8928
90.9856
70.5872
328683683328832983156
95.6944
eyeh-varpipeINDELI1_5HG002compoundhethomalt
14.0848
94.2249
7.6112
66.1111
3101926031563150
99.8099
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
77.4574
91.9436
66.9147
52.7787
3458303647632023147
98.2823
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
77.4574
91.9436
66.9147
52.7787
3458303647632023147
98.2823
mlin-fermikitINDELI1_5**
96.5813
95.3758
97.8177
52.8217
143697696714352332023142
98.1262
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
67.0250
86.3068
54.7854
60.5199
3246515411033923132
92.3349
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
67.0250
86.3068
54.7854
60.5199
3246515411033923132
92.3349
ndellapenna-hhgaINDELD1_5HG002compoundhethet
53.2922
85.5324
38.7035
48.7795
1478250200631773125
98.3632
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
60.4452
67.0715
55.0104
41.9298
29821464475438883114
80.0926
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.9906
94.9155
89.2405
50.9643
169139064345352393113
59.4197
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
73.3978
74.0332
72.7731
56.7536
1470351571471455053111
56.5123
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
83.6639
97.9752
73.0007
49.9045
8226170861731873103
97.3643
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
91.6276
91.2822
91.9757
41.4101
2920327894799241873097
73.9670
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
77.1843
73.4104
81.3673
37.5411
1340448551361631183097
99.3265
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
61.4979
50.4415
78.7620
33.7498
348534241169331533094
98.1288
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
89.1434
91.8292
86.6102
71.1229
32482892016231173094
99.2621
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
82.1732
97.9957
70.7498
40.7293
7236148762431523088
97.9695
gduggal-snapplatINDEL**homalt
81.6385
73.6219
91.6144
63.4553
92154330189939790983079
33.8426
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
64.2360
57.8454
72.2140
63.0306
1056276971364752513074
58.5412
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.2123
28.3742
40.0394
54.5997
17264357304945663071
67.2580
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
57.9782
64.4869
52.6629
39.1789
24951374425238223071
80.3506
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.9138
82.9573
84.8926
46.2434
1845837921853832993068
92.9979
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
44.6735
50.6428
39.9631
53.8471
11031075303045523067
67.3770
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
82.8608
81.8751
83.8705
37.8607
1686337331694132583048
93.5543
gduggal-snapfbINDELI1_5**
94.6996
95.8769
93.5508
58.0186
1444526212145507100313046
30.3659
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
91.8743
94.4038
89.4769
44.0923
137998183995546993029
64.4605
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
71.6357
72.7045
70.5979
41.7864
75302827906937773029
80.1959
ciseli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.5017
92.8720
80.9492
77.3758
3086623693128273623006
40.8313
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_11to50*
63.5899
54.1867
76.9418
62.7693
19828167642272468102991
43.9207
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.8642
98.5648
91.4314
69.9321
327594773326031172975
95.4443
ciseli-customINDELI1_5HG002complexvar*
86.2012
84.5873
87.8779
52.9140
2822051422787438452974
77.3472
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
76.3850
99.7475
61.8895
40.6948
474112482829732967
99.7982
ciseli-customSNP*map_siren*
89.7321
87.9989
91.5349
59.0239
12867917549128115118482967
25.0422
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.4570
43.9271
56.5797
43.4855
48686214500938442967
77.1852
anovak-vgSNPtvHG002complexvar*
97.7258
97.1262
98.3329
22.6263
239081707423558939942964
74.2113
anovak-vgINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
65.3950
71.2167
60.4531
49.7479
39861611584438232953
77.2430
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
67.6237
92.1660
53.4032
48.7367
3353285341329782941
98.7576