PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69451-69500 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | * | 49.0706 | 34.3750 | 85.7143 | 98.0609 | 11 | 21 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | het | 48.6957 | 35.0000 | 80.0000 | 97.7578 | 7 | 13 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.0149 | 4 | 3 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | homalt | 55.5556 | 38.4615 | 100.0000 | 93.8053 | 10 | 16 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | homalt | 56.4103 | 39.2857 | 100.0000 | 94.2149 | 11 | 17 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | homalt | 55.0000 | 37.9310 | 100.0000 | 94.3089 | 11 | 18 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | * | 16.6667 | 100.0000 | 1 | 5 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | homalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | het | 16.6667 | 9.0909 | 100.0000 | 99.5495 | 1 | 10 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | homalt | 60.0000 | 100.0000 | 3 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | * | 42.8571 | 27.2727 | 100.0000 | 99.7487 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | het | 35.2941 | 21.4286 | 100.0000 | 99.5902 | 3 | 11 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | homalt | 50.0000 | 100.0000 | 3 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | * | 42.8571 | 27.2727 | 100.0000 | 99.7537 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | het | 35.2941 | 21.4286 | 100.0000 | 99.6016 | 3 | 11 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | homalt | 50.0000 | 100.0000 | 3 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_siren | hetalt | 21.6216 | 12.1212 | 100.0000 | 96.0265 | 12 | 87 | 12 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | segdup | hetalt | 58.4071 | 42.8571 | 91.6667 | 93.2394 | 21 | 28 | 22 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | homalt | 71.7949 | 56.0000 | 100.0000 | 93.8416 | 28 | 22 | 21 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | * | 10.5263 | 5.8824 | 50.0000 | 85.7143 | 1 | 16 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | het | 18.1818 | 10.0000 | 100.0000 | 88.8889 | 1 | 9 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 6 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | * | 0.0000 | 0.0157 | 0.0000 | 0.0000 | 1 | 6376 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2718 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.0477 | 0.0000 | 0.0000 | 1 | 2097 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1561 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1309 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 665 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 335 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 309 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | HG002compoundhet | * | 0.0000 | 0.0467 | 0.0000 | 0.0000 | 1 | 2142 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 47 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0478 | 0.0000 | 0.0000 | 1 | 2092 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||