PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
66701-66750 / 86044 show all
gduggal-snapvardSNPtimap_l100_m0_e0hetalt
0.0000
0.0000
0.0000
014000
gduggal-snapvardSNPtimap_l100_m1_e0hetalt
0.0000
0.0000
0.0000
029000
gduggal-snapvardSNPtimap_l100_m2_e0hetalt
0.0000
0.0000
0.0000
030000
gduggal-snapvardSNPtimap_l100_m2_e1hetalt
0.0000
0.0000
0.0000
031000
gduggal-snapvardSNPtimap_l125_m0_e0hetalt
0.0000
0.0000
0.0000
08000
gduggal-snapvardSNPtimap_l125_m1_e0hetalt
0.0000
0.0000
0.0000
024000
gduggal-snapvardSNPtimap_l125_m2_e0hetalt
0.0000
0.0000
0.0000
024000
gduggal-snapvardSNPtimap_l125_m2_e1hetalt
0.0000
0.0000
0.0000
024000
gduggal-snapvardSNPtimap_l150_m0_e0hetalt
0.0000
0.0000
0.0000
03000
gduggal-snapvardSNPtimap_l150_m1_e0hetalt
0.0000
0.0000
0.0000
015000
gduggal-snapvardSNPtimap_l150_m2_e0hetalt
0.0000
0.0000
0.0000
015000
gduggal-snapvardSNPtimap_l150_m2_e1hetalt
0.0000
0.0000
0.0000
015000
gduggal-snapvardSNPtimap_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtimap_l250_m1_e0hetalt
0.0000
0.0000
0.0000
04000
gduggal-snapvardSNPtimap_l250_m2_e0hetalt
0.0000
0.0000
0.0000
05000
gduggal-snapvardSNPtimap_l250_m2_e1hetalt
0.0000
0.0000
0.0000
05000
gduggal-snapvardSNPtimap_sirenhetalt
0.0000
1.7544
0.0000
0.0000
156000
gduggal-snapvardSNPtisegduphetalt
0.0000
0.0000
0.0000
02000
gduggal-snapvardSNPtisegdupwithalt*
0.0000
100.0000
00000
gduggal-snapvardSNPtisegdupwithalthet
0.0000
100.0000
00000
gduggal-snapvardSNPtisegdupwithalthetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtisegdupwithalthomalt
0.0000
100.0000
00000
gduggal-snapvardSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtitech_badpromotershomalt
89.1892
80.4878
100.0000
42.1053
3383300
gduggal-snapvardSNPtv*hetalt
0.0000
0.6889
0.0000
0.0000
6865000
gduggal-snapvardSNPtvHG002complexvarhetalt
0.0000
1.9355
0.0000
0.0000
6304000
gduggal-snapvardSNPtvHG002compoundhethetalt
0.0000
0.6961
0.0000
0.0000
6856000
gduggal-snapvardSNPtvdecoy*
0.0000
0.0000
100.0000
99.9988
00100
gduggal-snapvardSNPtvdecoyhet
0.0000
100.0000
00000
gduggal-snapvardSNPtvdecoyhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtvdecoyhomalt
0.0000
0.0000
100.0000
99.9902
00100
gduggal-snapvardSNPtvfunc_cdshetalt
0.0000
0.0000
0.0000
010000
gduggal-snapvardSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
7.6923
0.0000
0.0000
112000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
6.6667
0.0000
0.0000
114000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000