PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1296 1297 1298 1299 1300 1301 1302 1303 1304 ... 1720 1721 » 64951-65000 / 86044 show all
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	het		100.0000		100.0000	1	0	0	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	38.0952	12	0	13	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m0_e0	hetalt	85.7143	75.0000	100.0000	91.1765	3	1	3	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m0_e0	homalt	95.6522	91.6667	100.0000	91.2698	11	1	11	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m1_e0	hetalt	95.2381	90.9091	100.0000	81.8182	20	2	20	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m1_e0	homalt	98.4615	96.9697	100.0000	88.9655	32	1	32	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m2_e0	hetalt	95.2381	90.9091	100.0000	83.6066	20	2	20	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m2_e0	homalt	98.4615	96.9697	100.0000	89.9687	32	1	32	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m2_e1	hetalt	95.2381	90.9091	100.0000	84.1270	20	2	20	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m2_e1	homalt	98.4615	96.9697	100.0000	90.2439	32	1	32	0	0
dgrover-gatk	INDEL	I6_15	map_l125_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	map_l125_m0_e0	homalt	90.9091	83.3333	100.0000	94.6237	5	1	5	0	0
dgrover-gatk	INDEL	I6_15	map_l125_m1_e0	hetalt	93.3333	87.5000	100.0000	86.7925	7	1	7	0	0
dgrover-gatk	INDEL	I6_15	map_l125_m1_e0	homalt	96.5517	93.3333	100.0000	93.1034	14	1	14	0	0
dgrover-gatk	INDEL	I6_15	map_l125_m2_e0	hetalt	93.3333	87.5000	100.0000	89.0625	7	1	7	0	0
dgrover-gatk	INDEL	I6_15	map_l125_m2_e0	homalt	96.5517	93.3333	100.0000	93.9130	14	1	14	0	0
dgrover-gatk	INDEL	I6_15	map_l125_m2_e1	hetalt	93.3333	87.5000	100.0000	89.3939	7	1	7	0	0
dgrover-gatk	INDEL	I6_15	map_l125_m2_e1	homalt	96.5517	93.3333	100.0000	94.1423	14	1	14	0	0
dgrover-gatk	INDEL	I6_15	map_l150_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	map_l150_m0_e0	homalt	85.7143	75.0000	100.0000	96.0000	3	1	3	0	0
dgrover-gatk	INDEL	I6_15	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	91.1765	3	0	3	0	0
dgrover-gatk	INDEL	I6_15	map_l150_m1_e0	homalt	92.3077	85.7143	100.0000	96.1039	6	1	6	0	0
dgrover-gatk	INDEL	I6_15	map_l150_m2_e0	hetalt	100.0000	100.0000	100.0000	93.0233	3	0	3	0	0
dgrover-gatk	INDEL	I6_15	map_l150_m2_e0	homalt	92.3077	85.7143	100.0000	96.5517	6	1	6	0	0
dgrover-gatk	INDEL	I6_15	map_l150_m2_e1	hetalt	100.0000	100.0000	100.0000	93.3333	3	0	3	0	0
dgrover-gatk	INDEL	I6_15	map_l150_m2_e1	homalt	93.3333	87.5000	100.0000	96.1749	7	1	7	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m0_e0	homalt		0.0000		100.0000	0	1	0	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m1_e0	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m1_e0	homalt	80.0000	66.6667	100.0000	97.8261	2	1	2	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m2_e0	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m2_e0	homalt	80.0000	66.6667	100.0000	97.9592	2	1	2	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m2_e1	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	map_l250_m2_e1	homalt	80.0000	66.6667	100.0000	98.0769	2	1	2	0	0
dgrover-gatk	INDEL	I6_15	map_siren	hetalt	97.8723	95.8333	100.0000	78.5047	69	3	69	0	0
dgrover-gatk	INDEL	I6_15	segdup	*	99.4253	98.8571	100.0000	92.8894	173	2	173	0	0
dgrover-gatk	INDEL	I6_15	segdup	het	99.3939	98.7952	100.0000	93.9394	82	1	82	0	0
dgrover-gatk	INDEL	I6_15	segdup	hetalt	98.8764	97.7778	100.0000	89.8851	44	1	44	0	0
dgrover-gatk	INDEL	I6_15	segdup	homalt	100.0000	100.0000	100.0000	92.7132	47	0	47	0	0
dgrover-gatk	INDEL	I6_15	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	I6_15	tech_badpromoters	*	100.0000	100.0000	100.0000	56.6667	13	0	13	0	0
dgrover-gatk	INDEL	I6_15	tech_badpromoters	het	100.0000	100.0000	100.0000	56.2500	7	0	7	0	0
dgrover-gatk	INDEL	I6_15	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	50.0000	3	0	3	0	0
dgrover-gatk	INDEL	I6_15	tech_badpromoters	homalt	100.0000	100.0000	100.0000	62.5000	3	0	3	0	0
dgrover-gatk	SNP	*	*	hetalt	99.8275	99.6556	100.0000	41.6667	868	3	868	0	0
dgrover-gatk	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	36.3636	308	2	308	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge