PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1237 1238 1239 1240 1241 1242 1243 1244 1245 ... 1720 1721 » 62001-62050 / 86044 show all
dgrover-gatk	INDEL	D1_5	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	D1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	D1_5	tech_badpromoters	*	97.2973	94.7368	100.0000	48.5714	18	1	18	0	0
dgrover-gatk	INDEL	D1_5	tech_badpromoters	het	93.3333	87.5000	100.0000	58.8235	7	1	7	0	0
dgrover-gatk	INDEL	D1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
dgrover-gatk	INDEL	D1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	43.7500	9	0	9	0	0
dgrover-gatk	INDEL	D6_15	decoy	*	100.0000	100.0000	100.0000	99.9120	1	0	1	0	0
dgrover-gatk	INDEL	D6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	D6_15	decoy	hetalt	100.0000	100.0000	100.0000	99.1379	1	0	1	0	0
dgrover-gatk	INDEL	D6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	55.2083	43	0	43	0	0
dgrover-gatk	INDEL	D6_15	func_cds	het	100.0000	100.0000	100.0000	51.6667	29	0	29	0	0
dgrover-gatk	INDEL	D6_15	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
dgrover-gatk	INDEL	D6_15	func_cds	homalt	100.0000	100.0000	100.0000	61.2903	12	0	12	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	97.1429	6	0	6	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.8571	3	0	3	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	98.0392	1	0	1	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	57.6471	36	3	36	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	97.8022	4	0	4	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	98.3607	2	0	2	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	83.3333	2	0	2	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.4595	374	0	374	1	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	57.0537	343	0	343	1	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	92.8571	2	0	2	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	94.4444	1	0	1	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	66.6667	1	0	1	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6785	100.0000	99.3590	84.3058	155	0	155	1	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	100.0000	100.0000	100.0000	81.9951	74	0	74	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	93.8053	92.9825	94.6429	99.4760	53	4	53	3	0	0.0000
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	68.0000	51.5152	100.0000	41.2979	187	176	199	0	0
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	52.8000	35.8696	100.0000	62.5000	33	59	33	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	het		55.5556		100.0000	5	4	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	50.4505	33.7349	100.0000	36.5385	28	55	33	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	87.5304	79.5455	97.2973	66.0550	35	9	36	1	0	0.0000
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	85.3933	77.5510	95.0000	75.6098	38	11	38	2	0	0.0000
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	60.8295	43.7086	100.0000	34.7826	66	85	75	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge