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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1218 1219 1220 1221 1222 1223 1224 1225 1226 ... 1720 1721 » 61051-61100 / 86044 show all
ckim-vqsr	SNP	ti	map_l250_m2_e0	homalt	35.8517	21.8411	100.0000	96.8007	382	1367	382	0	0
ckim-vqsr	SNP	ti	map_l250_m2_e1	*	59.7117	42.8487	98.4608	97.0448	2175	2901	2175	34	0	0.0000
ckim-vqsr	SNP	ti	map_l250_m2_e1	het	69.7793	54.1376	98.1319	97.0902	1786	1513	1786	34	0	0.0000
ckim-vqsr	SNP	ti	map_l250_m2_e1	hetalt		0.0000		100.0000	0	5	0	0	0
ckim-vqsr	SNP	ti	map_l250_m2_e1	homalt	36.0019	21.9526	100.0000	96.7910	389	1383	389	0	0
ckim-vqsr	SNP	ti	segdup	hetalt	100.0000	100.0000	100.0000	99.2453	2	0	2	0	0
ckim-vqsr	SNP	ti	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	tech_badpromoters	het	98.8506	97.7273	100.0000	47.5610	43	1	43	0	0
ckim-vqsr	SNP	ti	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	HG002complexvar	hetalt	96.6667	93.5484	100.0000	40.6953	290	20	290	0	0
ckim-vqsr	SNP	tv	HG002compoundhet	hetalt	97.5030	95.1276	100.0000	23.3645	820	42	820	0	0
ckim-vqsr	SNP	tv	decoy	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	decoy	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	decoy	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	func_cds	*	99.7367	99.6568	99.8166	38.6616	4356	15	4355	8	0	0.0000
ckim-vqsr	SNP	tv	func_cds	het	99.7366	99.7742	99.6990	44.6481	2651	6	2650	8	0	0.0000
ckim-vqsr	SNP	tv	func_cds	hetalt	100.0000	100.0000	100.0000	61.5385	10	0	10	0	0
ckim-vqsr	SNP	tv	func_cds	homalt	99.7352	99.4718	100.0000	25.8206	1695	9	1695	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	64.2221	522	2	522	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	83.3333	12	1	12	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	100.0000	100.0000	100.0000	94.2529	15	0	15	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4741	99.1018	99.8492	51.2858	1324	12	1324	2	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2357	98.7135	99.7636	54.0717	844	11	844	2	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8959	99.7921	100.0000	45.3303	480	1	480	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7241	99.7700	99.6783	64.5024	2169	5	2169	7	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6400	99.7837	99.4968	65.7726	1384	3	1384	7	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	80.0000	1	0	1	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	61.9602	784	2	784	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6878	99.7917	99.5842	69.2913	1437	3	1437	6	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6181	99.8906	99.3471	70.2781	913	1	913	6	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	75.0000	1	0	1	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.3737	523	2	523	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	98.7654	97.5610	100.0000	91.7355	40	1	40	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0

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