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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
6051-6100 / 86044 show all
anovak-vgSNPtvlowcmp_SimpleRepeat_diTR_11to50het
92.5559
94.4948
90.6950
66.9104
29181703119320136
42.5000
bgallagher-sentieonINDELD1_5*het
99.7512
99.8059
99.6966
58.6998
8740417087413266136
51.1278
ciseli-customSNP*map_l125_m2_e1het
76.8097
71.1707
83.4191
81.2554
210958545210704188136
3.2474
ciseli-customSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
88.5602
98.1043
80.7085
72.3823
1656321686403136
33.7469
ciseli-customINDEL*map_l150_m2_e1het
67.0194
62.9870
71.6034
93.6172
582342585232136
58.6207
gduggal-bwafbINDELI16_PLUSHG002compoundhet*
58.0785
43.2571
88.3503
33.1438
92712161039137136
99.2701
gduggal-bwafbSNP*map_l125_m2_e0*
98.8404
98.8764
98.8045
74.2723
4619852546198559136
24.3292
gduggal-bwafbSNP*map_l125_m2_e1*
98.8522
98.8878
98.8166
74.3375
4667752546677559136
24.3292
gduggal-bwafbSNPtiHG002compoundhet*
98.0359
99.0731
97.0203
40.7433
1731616217387534136
25.4682
gduggal-bwafbINDELI1_5*hetalt
90.3216
84.5735
96.9081
78.3569
946817274294137135
98.5401
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.4672
95.4477
99.5740
49.7805
253712131556135135
100.0000
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
31.7845
22.0149
57.1429
50.2269
118418188141135
95.7447
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.3847
84.0798
97.7117
90.1711
24141457124169566135
23.8516
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.3847
84.0798
97.7117
90.1711
24141457124169566135
23.8516
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
94.5951
96.6483
92.6274
77.7912
2105731872149135
90.6040
ckim-isaacINDELI1_5*homalt
96.6849
93.9498
99.5841
48.5995
56772365656743237135
56.9620
dgrover-gatkINDELI1_5*het
99.6919
99.6799
99.7038
61.0342
7878825378770234135
57.6923
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
73.2002
89.9486
61.7099
71.3186
12261371357842135
16.0333
gduggal-snapplatSNPtvHG002complexvarhomalt
98.5607
97.4503
99.6966
24.7080
92686242592657282135
47.8723
ghariani-varprowlSNPtvmap_l100_m1_e0*
97.8612
98.9756
96.7717
72.1277
2425025124251809135
16.6873
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
61.1743
60.6771
61.6798
85.0530
233151235146135
92.4658
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
70.6236
94.0299
56.5476
85.1656
18912190146135
92.4658
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
61.3722
45.0807
96.1020
31.7355
326739803353136135
99.2647
gduggal-snapvardINDELI6_15*homalt
43.3535
28.2462
93.2020
23.7129
176244761892138135
97.8261
jpowers-varprowlSNP*map_l150_m0_e0het
94.6235
94.6474
94.5997
86.3683
75154257515429135
31.4685
jmaeng-gatkINDELD6_15HG002compoundhethomalt
26.0870
100.0000
15.0000
70.0375
24024136135
99.2647
qzeng-customINDELI1_5HG002complexvar*
98.4325
97.7100
99.1658
52.3895
3259976432572274135
49.2701
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
84.4697
82.4873
86.5497
58.4519
9752071036161135
83.8509
ltrigg-rtg2SNP**het
99.8157
99.8572
99.7742
16.9842
1870922267618711584235135
3.1877
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
68.4444
95.6522
53.2872
40.7787
1547154135135
100.0000
mlin-fermikitSNP*segduphomalt
98.6182
98.6689
98.5676
86.0366
1060014310597154135
87.6623
ciseli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
44.5054
31.6677
74.8476
75.2826
4881053491165135
81.8182
cchapple-customINDELD16_PLUSHG002compoundhet*
93.0802
91.6275
94.5797
31.0588
21451962408138135
97.8261
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9561
99.6411
98.2804
53.4169
8330308287145135
93.1034
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9561
99.6411
98.2804
53.4169
8330308287145135
93.1034
bgallagher-sentieonINDEL*HG002complexvarhomalt
99.7010
99.9186
99.4844
57.3638
270052227015140135
96.4286
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5576
99.9158
97.2359
49.7376
474944749135134
99.2593
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.8058
95.8213
93.8116
73.3592
23161012380157134
85.3503
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200het
77.5406
92.6531
66.6667
80.5140
45436278139134
96.4029
egarrison-hhgaINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.6760
96.8929
98.4720
68.6413
1509348415080234134
57.2650
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
53.2627
83.1081
39.1892
51.8438
1232587135134
99.2593
dgrover-gatkINDELD6_15*homalt
98.8732
99.8735
97.8928
55.5601
631886318136134
98.5294
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.1733
99.8938
96.5110
60.0492
376243762136134
98.5294
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1733
99.8938
96.5110
60.0492
376243762136134
98.5294
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.6047
83.4039
87.9249
45.2229
985196983135134
99.2593
hfeng-pmm3INDELI1_5*homalt
99.7866
99.8014
99.7717
52.1729
6030812060313138134
97.1014
jlack-gatkINDELI1_5HG002compoundhethet
90.5365
97.8824
84.2162
85.4468
83218779146134
91.7808
jlack-gatkSNP*map_l125_m0_e0het
92.5432
98.6576
87.1425
85.9677
12494170124911843134
7.2708
gduggal-bwafbINDELI1_5HG002complexvarhomalt
98.3809
97.8212
98.9471
49.0711
1315529313156140134
95.7143
gduggal-bwafbSNP*map_l125_m1_e0*
98.8277
98.8550
98.8005
72.4101
4480851944808544134
24.6324