PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56701-56750 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | * | map_l100_m2_e0 | hetalt | 95.0068 | 91.2000 | 99.1453 | 86.4111 | 114 | 11 | 116 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 86.1953 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.9541 | 11 | 0 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 91.8455 | 38 | 2 | 38 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 92.5512 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 92.6874 | 40 | 3 | 40 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4785 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.2693 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9875 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 94.8655 | 21 | 2 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7033 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3094 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_siren | hetalt | 96.4527 | 93.5223 | 99.5726 | 86.1210 | 231 | 16 | 233 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | segdup | hetalt | 96.4143 | 93.0769 | 100.0000 | 94.3681 | 121 | 9 | 123 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9974 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9960 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.5455 | 75 | 1 | 75 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 52.5000 | 38 | 1 | 38 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||