PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
54301-54350 / 86044 show all
asubramanian-gatkINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9949
10100
asubramanian-gatkINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9927
10100
asubramanian-gatkINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
asubramanian-gatkINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
asubramanian-gatkINDELD1_5tech_badpromoters*
97.2973
94.7368
100.0000
48.5714
1811800
asubramanian-gatkINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
55.5556
80800
asubramanian-gatkINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
asubramanian-gatkINDELD1_5tech_badpromotershomalt
94.1176
88.8889
100.0000
46.6667
81800
asubramanian-gatkINDELD6_15decoy*
100.0000
100.0000
100.0000
99.9306
10100
asubramanian-gatkINDELD6_15decoyhet
0.0000
100.0000
00000
asubramanian-gatkINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
98.8764
10100
asubramanian-gatkINDELD6_15decoyhomalt
0.0000
100.0000
00000
asubramanian-gatkINDELD6_15func_cds*
98.8235
97.6744
100.0000
56.7010
4214200
asubramanian-gatkINDELD6_15func_cdshet
98.2456
96.5517
100.0000
54.0984
2812800
asubramanian-gatkINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
asubramanian-gatkINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
61.2903
1201200
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.0443
60600
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7941
30300
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.9167
10100
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7778
40400
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.3607
20200
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4638
99.1979
99.7312
59.5652
371337110
0.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5620
99.4169
99.7076
57.3034
341234110
0.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
91.3043
20200
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
92.8571
10100
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
66.6667
10100
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.6764
99.3548
100.0000
84.7525
154115400
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.0388
7407400
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
92.7273
89.4737
96.2264
99.5017
5165120
0.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
91.3580
88.0952
94.8718
99.3834
3753720
0.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
94.1176
88.8889
100.0000
99.3191
81800
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8087
60600
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.7425
99.4863
100.0000
18.9415
581358200
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.3545
94.8454
100.0000
23.3333
9259200
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
36.3636
2102100
asubramanian-gatkINDELD6_15map_l100_m0_e0hetalt
94.4444
89.4737
100.0000
83.6364
1721800
asubramanian-gatkINDELD6_15map_l100_m0_e0homalt
93.3333
87.5000
100.0000
91.1765
2132100
asubramanian-gatkINDELD6_15map_l100_m1_e0homalt
94.2149
89.0625
100.0000
87.5546
5775700
asubramanian-gatkINDELD6_15map_l100_m2_e0homalt
94.3089
89.2308
100.0000
87.9418
5875800
asubramanian-gatkINDELD6_15map_l100_m2_e1homalt
94.4882
89.5522
100.0000
87.8543
6076000
asubramanian-gatkINDELD6_15map_l125_m0_e0*
94.3820
89.3617
100.0000
94.9766
4254300
asubramanian-gatkINDELD6_15map_l125_m0_e0het
96.4286
93.1034
100.0000
95.6240
2722700