PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53701-53750 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 95.5224 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 94.3820 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 95.6790 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.2381 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 95.7317 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 95.3271 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.5301 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | homalt | 91.4286 | 94.1176 | 88.8889 | 91.7051 | 32 | 2 | 32 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.3811 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | het | 94.5946 | 100.0000 | 89.7436 | 95.7330 | 37 | 0 | 35 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3668 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9303 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9489 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6479 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9352 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 38.0769 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | func_cds | het | 99.4220 | 100.0000 | 98.8506 | 43.8710 | 85 | 0 | 86 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 27.4510 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.1692 | 87.2119 | 100.0000 | 32.0201 | 1589 | 233 | 1622 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.8453 | 10 | 1 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.6460 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.3548 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8913 | 95.8799 | 99.9888 | 64.9301 | 8913 | 383 | 8932 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0416 | 94.2633 | 99.9886 | 32.8733 | 8758 | 533 | 8802 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.1875 | 85.5072 | 100.0000 | 56.6176 | 59 | 10 | 59 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6109 | 99.2248 | 100.0000 | 61.6192 | 256 | 2 | 256 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.7849 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.5597 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.3399 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 81.3953 | 72 | 2 | 72 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8165 | 99.6337 | 100.0000 | 76.1717 | 544 | 2 | 544 | 0 | 0 | ||