PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52351-52400 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8275 | 99.6556 | 100.0000 | 44.5296 | 4051 | 14 | 4051 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3889 | 98.8731 | 99.9101 | 37.5970 | 6668 | 76 | 6668 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.5834 | 3987 | 0 | 3987 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.8396 | 83.1683 | 97.6744 | 93.4799 | 84 | 17 | 84 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.7143 | 77.2727 | 96.2264 | 93.6375 | 51 | 15 | 51 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.0588 | 94.2857 | 100.0000 | 93.2099 | 33 | 2 | 33 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7169 | 99.5157 | 99.9189 | 27.4838 | 2466 | 12 | 2465 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 94.7368 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 93.6709 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5455 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6364 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.6098 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 31 | 0 | 31 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.0843 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.5625 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.8049 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 73.3333 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | segdup | het | 99.6179 | 99.7007 | 99.5352 | 89.0346 | 11994 | 36 | 11992 | 56 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8889 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||