PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
4601-4650 / 86044 show all
ltrigg-rtg2INDELD1_5segduphomalt
99.8605
99.7214
100.0000
92.9966
358135500
ltrigg-rtg2INDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9917
10100
ltrigg-rtg2INDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9858
10100
ltrigg-rtg2INDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD1_5tech_badpromoters*
97.2973
94.7368
100.0000
33.3333
1811800
ltrigg-rtg2INDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
38.4615
80800
ltrigg-rtg2INDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
33.3333
20200
ltrigg-rtg2INDELD1_5tech_badpromotershomalt
94.1176
88.8889
100.0000
27.2727
81800
ltrigg-rtg2INDELD6_15HG002complexvarhomalt
99.0937
98.2036
100.0000
51.0204
114821110400
ltrigg-rtg2INDELD6_15decoy*
100.0000
100.0000
100.0000
99.8573
10100
ltrigg-rtg2INDELD6_15decoyhet
0.0000
100.0000
00000
ltrigg-rtg2INDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.0385
10100
ltrigg-rtg2INDELD6_15decoyhomalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD6_15func_cds*
98.8235
97.6744
100.0000
48.1481
4214200
ltrigg-rtg2INDELD6_15func_cdshet
98.2456
96.5517
100.0000
44.0000
2812800
ltrigg-rtg2INDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
66.6667
20200
ltrigg-rtg2INDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
52.0000
1201200
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
96.2500
60600
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
96.9072
30300
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.0000
20200
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.3684
10100
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.0861
98.0861
98.0861
68.2853
205420540
0.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.0423
99.2126
96.8992
68.9904
126112540
0.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
63.4615
3633800
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
69.7842
4304200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.3684
40400
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.8723
20200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5625
99.4792
99.6460
61.1149
573356320
0.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
51.8807
374037100
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6910
99.3840
100.0000
60.2178
484347500
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
49.6307
343034100
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
75.0000
20200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
66.6667
10100
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
50.0000
10100
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.3396
99.3548
99.3243
81.1705
154114710
0.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
77.4691
7407300
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
95.0000
90.4762
100.0000
99.0568
3844000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.4784
60700
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4680
99.0588
99.8807
41.3986
842883710
0.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
98.1627
97.3958
98.9418
36.7893
187518720
0.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7101
99.4220
100.0000
30.6569
172010171000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.7862
99.5733
100.0000
36.3469
700369000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5701
99.1438
100.0000
25.7325
579558300
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7738
99.5485
100.0000
26.8007
441243700
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
97.8417
95.7746
100.0000
36.3208
136613500
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
95.6522
91.6667
100.0000
68.6567
2222100