PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
4501-4550 / 86044 show all
ltrigg-rtg2INDELD16_PLUSmap_l250_m1_e0het
80.0000
66.6667
100.0000
95.5556
21200
ltrigg-rtg2INDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
90.0000
10100
ltrigg-rtg2INDELD16_PLUSmap_l250_m1_e0homalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e0*
88.8889
80.0000
100.0000
95.1220
41400
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e0het
80.0000
66.6667
100.0000
96.2963
21200
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
90.0000
10100
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
94.4444
10100
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e1*
88.8889
80.0000
100.0000
95.2941
41400
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e1het
80.0000
66.6667
100.0000
96.4286
21200
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
90.9091
10100
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e1homalt
100.0000
100.0000
100.0000
94.4444
10100
ltrigg-rtg2INDELD16_PLUSmap_siren*
93.7214
88.8112
99.2063
83.9490
1271612510
0.0000
ltrigg-rtg2INDELD16_PLUSmap_sirenhet
96.7234
94.8718
98.6486
85.2883
7447310
0.0000
ltrigg-rtg2INDELD16_PLUSmap_sirenhetalt
89.2857
80.6452
100.0000
80.8000
2562400
ltrigg-rtg2INDELD16_PLUSmap_sirenhomalt
90.3226
82.3529
100.0000
82.1656
2862800
ltrigg-rtg2INDELD16_PLUSsegduphetalt
94.1176
88.8889
100.0000
92.6606
81800
ltrigg-rtg2INDELD16_PLUSsegduphomalt
100.0000
100.0000
100.0000
91.6084
1201200
ltrigg-rtg2INDELD16_PLUSsegdupwithalt*
0.0000
100.0000
00000
ltrigg-rtg2INDELD16_PLUSsegdupwithalthet
0.0000
100.0000
00000
ltrigg-rtg2INDELD16_PLUSsegdupwithalthetalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD16_PLUStech_badpromoters*
100.0000
100.0000
100.0000
42.8571
40400
ltrigg-rtg2INDELD16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
0.0000
40400
ltrigg-rtg2INDELD16_PLUStech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2INDELD16_PLUStech_badpromotershomalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD1_5decoy*
100.0000
100.0000
100.0000
99.8657
40600
ltrigg-rtg2INDELD1_5decoyhet
100.0000
100.0000
100.0000
99.8616
20400
ltrigg-rtg2INDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.6350
10100
ltrigg-rtg2INDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9232
10100
ltrigg-rtg2INDELD1_5func_cds*
99.3730
99.3711
99.3750
31.0345
158115910
0.0000
ltrigg-rtg2INDELD1_5func_cdshet
99.4220
100.0000
98.8506
36.0294
8508610
0.0000
ltrigg-rtg2INDELD1_5func_cdshetalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD1_5func_cdshomalt
99.3197
98.6486
100.0000
20.6522
7317300
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9899
1101100
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.9290
80800
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.3871
10100
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2857
20200
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8235
97.6744
100.0000
54.6263
252625500
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.0557
1001000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.0305
70700
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.3051
10100
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2806
20200
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.2620
98.5348
100.0000
70.7344
538853000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.4550
98.9160
100.0000
75.9184
365435400
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
96.8750
10100
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
96.1538
10100
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7686
99.5382
100.0000
50.6863
10131471009500
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9981
10200