PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43401-43450 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.9730 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.4762 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.9899 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.5185 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.9133 | 100.0000 | 99.8267 | 69.4709 | 576 | 0 | 576 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8974 | 100.0000 | 99.7951 | 67.6178 | 487 | 0 | 487 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6785 | 100.0000 | 99.3590 | 84.8984 | 155 | 0 | 155 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.6291 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 96.3636 | 92.9825 | 100.0000 | 99.5388 | 53 | 4 | 53 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.0000 | 90.4762 | 100.0000 | 99.3499 | 38 | 4 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1115 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8705 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 98.4293 | 96.9072 | 100.0000 | 20.3390 | 94 | 3 | 94 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 21 | 0 | 21 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | * | 95.0980 | 94.1748 | 96.0396 | 90.6481 | 97 | 6 | 97 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | het | 95.0820 | 96.6667 | 93.5484 | 91.2181 | 58 | 2 | 58 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.7619 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 92.4138 | 22 | 2 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | het | 97.2549 | 98.4127 | 96.1240 | 90.5564 | 124 | 2 | 124 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 69.7561 | 62 | 6 | 62 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 91.0377 | 128 | 3 | 128 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 71.0280 | 62 | 6 | 62 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0588 | 97.7778 | 96.3504 | 90.9631 | 132 | 3 | 132 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 70.9251 | 66 | 7 | 66 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | * | 93.6170 | 93.6170 | 93.6170 | 93.6913 | 44 | 3 | 44 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 93.7500 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 87.8049 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 94.7115 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | het | 96.9231 | 98.4375 | 95.4545 | 92.5255 | 63 | 1 | 63 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 82.2917 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | het | 96.5035 | 97.1831 | 95.8333 | 92.7565 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 84.5455 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | het | 96.5035 | 97.1831 | 95.8333 | 92.9550 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |