PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42851-42900 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8596 | 99.7197 | 100.0000 | 23.7942 | 1423 | 4 | 1422 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.9231 | 62.5000 | 100.0000 | 95.9350 | 5 | 3 | 5 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 4 | 2 | 4 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.7368 | 1 | 1 | 1 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 14 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 29 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 31 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 8 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_siren | hetalt | 0.0000 | 98.2456 | 0.0000 | 0.0000 | 56 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | tech_badpromoters | * | 99.4152 | 100.0000 | 98.8372 | 43.4211 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 47.0588 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 38.8060 | 41 | 0 | 41 | 0 | 0 | ||
| cchapple-custom | SNP | tv | * | hetalt | 0.0000 | 99.6556 | 0.0000 | 0.0000 | 868 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | HG002complexvar | hetalt | 0.0000 | 99.0323 | 0.0000 | 0.0000 | 307 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 99.6520 | 0.0000 | 0.0000 | 859 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | func_cds | * | 99.5556 | 99.9085 | 99.2053 | 32.6708 | 4367 | 4 | 4369 | 35 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | func_cds | het | 99.2733 | 99.8495 | 98.7037 | 37.1216 | 2653 | 4 | 2665 | 35 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | func_cds | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 10 | 0 | 0 | 0 | 0 | ||