PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40451-40500 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.4654 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 88.7246 | 93.7500 | 84.2105 | 94.4928 | 15 | 1 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.5399 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e1 | het | 88.7246 | 93.7500 | 84.2105 | 94.6023 | 15 | 1 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 96.2025 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 95.0000 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 96.5318 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 80.0000 | 100.0000 | 66.6667 | 95.5556 | 3 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 96.5517 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 80.0000 | 100.0000 | 66.6667 | 96.2025 | 3 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 96.6019 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 80.0000 | 100.0000 | 66.6667 | 96.2733 | 3 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 70.9677 | 0.0000 | 0.0000 | 22 | 9 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 6 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5205 | 12 | 0 | 12 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | * | hetalt | 0.0000 | 94.5046 | 0.0000 | 0.0000 | 9682 | 563 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 88.4615 | 0.0000 | 0.0000 | 1196 | 156 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 94.5380 | 0.0000 | 0.0000 | 9658 | 558 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9664 | 4 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9733 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9303 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 32.9167 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | func_cds | het | 99.4220 | 100.0000 | 98.8506 | 40.4110 | 85 | 0 | 86 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 21.2766 | 74 | 0 | 74 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.7728 | 0.0000 | 0.0000 | 1581 | 241 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9729 | 11 | 0 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8432 | 8 | 0 | 9 | 0 | 0 | ||