PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36501-36550 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9844 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0629 | 98.1432 | 100.0000 | 42.5707 | 1110 | 21 | 1117 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9970 | 91.8216 | 98.4000 | 75.9152 | 247 | 22 | 246 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.1927 | 82.3529 | 88.2353 | 94.1379 | 42 | 9 | 30 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.9121 | 94.0092 | 100.0000 | 39.9441 | 204 | 13 | 215 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1416 | 98.2979 | 100.0000 | 68.1568 | 462 | 8 | 463 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5185 | 99.0415 | 100.0000 | 36.0825 | 310 | 3 | 310 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 53.7037 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 87.5000 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 12.0000 | 22 | 1 | 22 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | het | 98.2965 | 97.2393 | 99.3769 | 85.1320 | 317 | 9 | 319 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0397 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.3748 | 97.2973 | 99.4764 | 82.8507 | 756 | 21 | 760 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 88.7701 | 42 | 2 | 42 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.3431 | 97.2257 | 99.4865 | 84.0858 | 771 | 22 | 775 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 89.7810 | 42 | 2 | 42 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.3148 | 97.1605 | 99.4969 | 84.1760 | 787 | 23 | 791 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.7375 | 43 | 2 | 43 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m0_e0 | het | 97.8850 | 96.3542 | 99.4652 | 88.8955 | 185 | 7 | 186 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1905 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | het | 97.9184 | 96.7078 | 99.1597 | 85.5451 | 470 | 16 | 472 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2540 | 17 | 0 | 17 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | het | 97.8610 | 96.5795 | 99.1770 | 86.8328 | 480 | 17 | 482 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4483 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | het | 97.9079 | 96.6535 | 99.1952 | 86.9004 | 491 | 17 | 493 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5593 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | het | 97.0874 | 94.3396 | 100.0000 | 92.4739 | 100 | 6 | 101 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0526 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.1183 | 95.6522 | 98.6301 | 89.0019 | 286 | 13 | 288 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0438 | 95.4693 | 98.6711 | 90.0496 | 295 | 14 | 297 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e1 | het | 97.1195 | 95.5836 | 98.7055 | 90.0771 | 303 | 14 | 305 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6710 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.2527 | 13 | 2 | 13 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.1691 | 56 | 4 | 56 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9798 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3846 | 93.9394 | 96.8750 | 96.3801 | 62 | 4 | 62 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4375 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3846 | 93.9394 | 96.8750 | 96.4912 | 62 | 4 | 62 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4615 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_siren | het | 98.8017 | 98.0369 | 99.5786 | 80.1885 | 1648 | 33 | 1654 | 7 | 0 | 0.0000 | |