PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35451-35500 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.7273 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.7583 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | * | 99.1354 | 98.2857 | 100.0000 | 92.5444 | 172 | 3 | 172 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 93.5280 | 82 | 1 | 82 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.1376 | 43 | 2 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.2185 | 47 | 0 | 47 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 53.5714 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | * | hetalt | 99.8851 | 99.7704 | 100.0000 | 49.0323 | 869 | 2 | 869 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 39.9610 | 308 | 2 | 308 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 23.2143 | 860 | 2 | 860 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | func_cds | * | 99.9174 | 99.9780 | 99.8569 | 24.2548 | 18146 | 4 | 18143 | 26 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | func_cds | het | 99.8702 | 99.9731 | 99.7675 | 25.5047 | 11158 | 3 | 11155 | 26 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | func_cds | homalt | 99.9928 | 99.9857 | 100.0000 | 22.0422 | 6978 | 1 | 6978 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.6573 | 96.0544 | 99.3146 | 65.3032 | 2897 | 119 | 2898 | 20 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 85.3659 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3687 | 98.9523 | 99.7887 | 50.3034 | 4250 | 45 | 4250 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0633 | 98.4363 | 99.6983 | 48.3242 | 2644 | 42 | 2644 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8756 | 99.8135 | 99.9378 | 53.0803 | 1606 | 3 | 1606 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5537 | 99.1915 | 99.9186 | 53.5276 | 6134 | 50 | 6134 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3479 | 98.8298 | 99.8715 | 53.0817 | 3885 | 46 | 3885 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9111 | 99.8224 | 100.0000 | 54.2066 | 2248 | 4 | 2248 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5600 | 99.2006 | 99.9221 | 57.7897 | 3847 | 31 | 3847 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3754 | 98.8773 | 99.8785 | 57.1429 | 2466 | 28 | 2466 | 3 | 0 | 0.0000 | |