PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32601-32650 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5862 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 42.8571 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9223 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9272 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8325 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9254 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | * | 99.6618 | 99.3258 | 100.0000 | 42.1121 | 442 | 3 | 444 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | het | 99.5305 | 99.0654 | 100.0000 | 46.0957 | 212 | 2 | 214 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 37.0474 | 226 | 0 | 226 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3115 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 99.3844 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0297 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.4100 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9487 | 86.8263 | 100.0000 | 68.5775 | 145 | 22 | 148 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 97.1429 | 100.0000 | 94.4444 | 99.3558 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4166 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.4949 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2533 | 96.5665 | 100.0000 | 76.0711 | 225 | 8 | 229 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.8506 | 97.7273 | 100.0000 | 79.4025 | 129 | 3 | 131 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9261 | 100.0000 | 99.8524 | 72.4033 | 1353 | 0 | 1353 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 98.1982 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.6301 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.4820 | 97.0093 | 100.0000 | 73.5592 | 519 | 16 | 523 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.3170 | 80.6452 | 95.1923 | 99.9131 | 100 | 24 | 99 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.7839 | 72.4138 | 93.9394 | 99.8971 | 63 | 24 | 62 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8696 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9492 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7925 | 97.6137 | 100.0000 | 42.2217 | 2618 | 64 | 2637 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5101 | 99.0249 | 100.0000 | 30.0763 | 914 | 9 | 916 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2656 | 92.8000 | 100.0000 | 29.5181 | 116 | 9 | 117 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.9621 | 30 | 3 | 31 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | hetalt | 94.0171 | 88.7097 | 100.0000 | 86.3804 | 110 | 14 | 111 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | hetalt | 94.0678 | 88.8000 | 100.0000 | 87.3176 | 111 | 14 | 113 | 0 | 0 | ||