PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30001-30050 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 65.7143 | 54.7619 | 82.1429 | 95.6923 | 23 | 19 | 23 | 5 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.7778 | 48.1481 | 72.2222 | 96.3710 | 13 | 14 | 13 | 5 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.4242 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.1923 | 94.8440 | 99.6599 | 28.7215 | 4378 | 238 | 4395 | 15 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.8750 | 93.9737 | 99.9612 | 23.5381 | 2573 | 165 | 2575 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 95.0820 | 6 | 3 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m1_e0 | hetalt | 71.8750 | 56.0976 | 100.0000 | 75.7895 | 23 | 18 | 23 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 77.3585 | 24 | 18 | 24 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 76.6355 | 25 | 18 | 25 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 85.7143 | 4 | 5 | 4 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 78.5714 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 81.0127 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 81.0127 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | map_l150_m1_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.3016 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 72.4551 | 46 | 35 | 46 | 0 | 0 | ||
| ckim-isaac | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | tech_badpromoters | * | 93.2432 | 87.8981 | 99.2806 | 31.5271 | 138 | 19 | 138 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | tech_badpromoters | het | 91.6667 | 85.7143 | 98.5075 | 37.9630 | 66 | 11 | 66 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | tech_badpromoters | homalt | 94.7368 | 90.0000 | 100.0000 | 24.2105 | 72 | 8 | 72 | 0 | 0 | ||
| ckim-isaac | SNP | ti | * | hetalt | 96.1641 | 92.6117 | 100.0000 | 30.2717 | 539 | 43 | 539 | 0 | 0 | ||