PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28701-28750 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | * | 95.8333 | 92.0000 | 100.0000 | 96.3082 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | het | 96.5517 | 93.3333 | 100.0000 | 96.7290 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.2264 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | * | 95.8333 | 92.0000 | 100.0000 | 96.7422 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | het | 96.5517 | 93.3333 | 100.0000 | 97.0833 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.7213 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | * | 96.1538 | 92.5926 | 100.0000 | 96.5847 | 25 | 2 | 25 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | het | 96.7742 | 93.7500 | 100.0000 | 96.9819 | 15 | 1 | 15 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.3158 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 98.7047 | 5 | 2 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 98.9170 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 98.6333 | 6 | 2 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7421 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 98.6928 | 6 | 2 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 98.7952 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_siren | het | 96.7742 | 94.4056 | 99.2647 | 88.7696 | 135 | 8 | 135 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 76.6892 | 69 | 3 | 69 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | segdup | * | 98.5591 | 97.7143 | 99.4186 | 93.9373 | 171 | 4 | 171 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 95.4267 | 81 | 2 | 81 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.5377 | 43 | 2 | 43 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.5750 | 47 | 0 | 47 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | SNP | * | HG002complexvar | hetalt | 96.6667 | 93.5484 | 100.0000 | 40.6953 | 290 | 20 | 290 | 0 | 0 | ||
| ckim-vqsr | SNP | * | HG002compoundhet | hetalt | 97.5030 | 95.1276 | 100.0000 | 23.3645 | 820 | 42 | 820 | 0 | 0 | ||
| ckim-vqsr | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | func_cds | * | 99.7574 | 99.7080 | 99.8069 | 31.6969 | 18097 | 53 | 18094 | 35 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | func_cds | het | 99.7448 | 99.8029 | 99.6867 | 36.7154 | 11139 | 22 | 11136 | 35 | 0 | 0.0000 | |