PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2701-2750 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.5294 | 97.1014 | 100.0000 | 91.7160 | 67 | 2 | 70 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5318 | 12 | 0 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 87.5000 | 73.6842 | 97.7778 | 14 | 2 | 14 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 69.5652 | 80.0000 | 61.5385 | 98.1429 | 8 | 2 | 8 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1039 | 6 | 0 | 6 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5507 | 97.1429 | 100.0000 | 93.0712 | 34 | 1 | 37 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 98.1685 | 5 | 1 | 5 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | map_l100_m0_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 89.8990 | 10 | 4 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m1_e0 | hetalt | 81.6327 | 68.9655 | 100.0000 | 88.0952 | 20 | 9 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m2_e0 | hetalt | 82.3529 | 70.0000 | 100.0000 | 88.3978 | 21 | 9 | 21 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m2_e1 | hetalt | 83.0189 | 70.9677 | 100.0000 | 87.9121 | 22 | 9 | 22 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.0000 | 4 | 4 | 4 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.8750 | 2 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.5094 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6230 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 98.5294 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 97.3333 | 2 | 3 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 97.3684 | 2 | 3 | 2 | 0 | 0 | ||