PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2651-2700 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 98.3146 | 6 | 1 | 6 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | map_l100_m0_e0 | hetalt | 81.4815 | 68.7500 | 100.0000 | 92.3077 | 11 | 5 | 11 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 96.6942 | 4 | 5 | 4 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.7959 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.6842 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.7173 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 98.3740 | 2 | 3 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 98.3871 | 2 | 3 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_siren | hetalt | 86.0912 | 76.5432 | 98.3607 | 83.9474 | 62 | 19 | 60 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9228 | 7 | 0 | 7 | 0 | 0 | ||
| qzeng-custom | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | tech_badpromoters | het | 95.5975 | 98.7013 | 92.6829 | 49.3827 | 76 | 1 | 76 | 6 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | ti | HG002complexvar | hetalt | 97.0149 | 94.2029 | 100.0000 | 39.1447 | 195 | 12 | 185 | 0 | 0 | ||
| qzeng-custom | SNP | ti | HG002compoundhet | hetalt | 98.4211 | 96.8912 | 100.0000 | 21.9547 | 561 | 18 | 551 | 0 | 0 | ||
| qzeng-custom | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9922 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5318 | 12 | 0 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||