PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2551-2600 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 49.0909 | 32.5301 | 100.0000 | 83.3333 | 27 | 56 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.8885 | 77.2727 | 96.6667 | 81.2500 | 34 | 10 | 29 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 50.0000 | 0.0000 | 96.5981 | 1 | 1 | 0 | 81 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 96.5184 | 0 | 0 | 0 | 54 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 95.8140 | 0 | 0 | 0 | 27 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 82.4903 | 70.1987 | 100.0000 | 69.8113 | 106 | 45 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4026 | 94.9367 | 100.0000 | 26.5823 | 225 | 12 | 290 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 50.0000 | 100.0000 | 6 | 6 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 87.8049 | 3 | 1 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 61.0354 | 58.3333 | 64.0000 | 82.6389 | 7 | 5 | 16 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 78.0822 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 61.0583 | 75.7576 | 51.1364 | 71.4286 | 25 | 8 | 45 | 43 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 80.7229 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 61.4480 | 75.7576 | 51.6854 | 73.5905 | 25 | 8 | 46 | 43 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 77.7778 | 63.6364 | 100.0000 | 81.6092 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 61.4480 | 75.7576 | 51.6854 | 74.0525 | 25 | 8 | 46 | 43 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 58.3333 | 50.0000 | 70.0000 | 90.0990 | 3 | 3 | 7 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 85.4545 | 5 | 3 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 74.1573 | 73.3333 | 75.0000 | 82.9787 | 11 | 4 | 24 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 85.2459 | 5 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 75.1899 | 73.3333 | 77.1429 | 83.7209 | 11 | 4 | 27 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 85.4839 | 5 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 75.1899 | 73.3333 | 77.1429 | 84.1629 | 11 | 4 | 27 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 36.3636 | 25.0000 | 66.6667 | 92.1053 | 1 | 3 | 4 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 56.6038 | 42.8571 | 83.3333 | 90.4762 | 3 | 4 | 10 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | homalt | 57.3529 | 42.8571 | 86.6667 | 90.0000 | 3 | 4 | 13 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 63.4146 | 50.0000 | 86.6667 | 90.4459 | 4 | 4 | 13 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 75.0000 | 98.7915 | 0 | 1 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 50.0000 | 99.2424 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 47.0588 | 33.3333 | 80.0000 | 93.9759 | 1 | 2 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 2 | 0 | 0 | ||