PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2451-2500 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4286 | 100.0000 | 98.8636 | 79.0974 | 87 | 0 | 87 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0099 | 100.0000 | 98.0392 | 81.6547 | 52 | 0 | 50 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.1538 | 12 | 0 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.3419 | 23 | 0 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 87.5000 | 77.7778 | 100.0000 | 89.0625 | 7 | 2 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.8571 | 86.6667 | 100.0000 | 96.9412 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 97.8261 | 100.0000 | 66.2162 | 225 | 5 | 225 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 20.6349 | 49 | 2 | 50 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8764 | 97.7778 | 100.0000 | 60.3604 | 44 | 1 | 44 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 86.3636 | 76.0000 | 100.0000 | 28.5714 | 19 | 6 | 20 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.2745 | 78.5714 | 95.6522 | 93.1751 | 22 | 6 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 88.2353 | 78.9474 | 100.0000 | 93.3921 | 15 | 4 | 15 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 82.3529 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 94.6237 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 66.0000 | 17 | 9 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 67.3077 | 17 | 9 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 64.2857 | 20 | 10 | 20 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 93.7824 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.8000 | 9 | 0 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.3396 | 92.5926 | 96.1538 | 92.5714 | 25 | 2 | 25 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.3077 | 90.0000 | 94.7368 | 91.8103 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.2105 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.9596 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.3396 | 92.5926 | 96.1538 | 93.1579 | 25 | 2 | 25 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.3077 | 90.0000 | 94.7368 | 92.4901 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 92.5926 | 89.2857 | 96.1538 | 93.2468 | 25 | 3 | 25 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.3077 | 90.0000 | 94.7368 | 92.6357 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 85.7143 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 7 | 0 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 91.9540 | 7 | 0 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 96.5517 | 93.3333 | 100.0000 | 94.2623 | 14 | 1 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 96.2963 | 92.8571 | 100.0000 | 91.8750 | 13 | 1 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 96.9697 | 94.1176 | 100.0000 | 94.1392 | 16 | 1 | 16 | 0 | 0 | ||