PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21851-21900 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 76.9231 | 62.5000 | 100.0000 | 99.7532 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 85.8407 | 75.1938 | 100.0000 | 69.0590 | 194 | 64 | 194 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 82.3529 | 70.0000 | 100.0000 | 99.7165 | 7 | 3 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 83.3333 | 71.4286 | 100.0000 | 99.7405 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5294 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7890 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 86.0465 | 75.5102 | 100.0000 | 26.0000 | 37 | 12 | 37 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 97.6501 | 9 | 5 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | homalt | 70.5000 | 54.6512 | 99.2958 | 90.2204 | 141 | 117 | 141 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | * | 69.6335 | 53.6290 | 99.2537 | 95.9184 | 266 | 230 | 266 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | het | 70.5224 | 54.7826 | 98.9529 | 96.3515 | 189 | 156 | 189 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 99.2701 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | homalt | 67.2646 | 50.6757 | 100.0000 | 92.9044 | 75 | 73 | 75 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 76.1905 | 61.5385 | 100.0000 | 98.3968 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.3949 | 56.7335 | 100.0000 | 90.7216 | 198 | 151 | 198 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 98.3784 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | homalt | 72.9494 | 57.4176 | 100.0000 | 91.2000 | 209 | 155 | 209 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 98.4155 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | homalt | 73.0375 | 57.5269 | 100.0000 | 91.1825 | 214 | 158 | 214 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | * | 63.2075 | 46.3668 | 99.2593 | 97.4310 | 134 | 155 | 134 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | het | 64.2140 | 47.5248 | 98.9691 | 97.6861 | 96 | 106 | 96 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.5475 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | homalt | 60.6557 | 43.5294 | 100.0000 | 95.6057 | 37 | 48 | 37 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 99.2718 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | homalt | 68.2081 | 51.7544 | 100.0000 | 92.8701 | 118 | 110 | 118 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 99.3421 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 69.1892 | 52.8926 | 100.0000 | 93.1660 | 128 | 114 | 128 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.1453 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | homalt | 69.1293 | 52.8226 | 100.0000 | 93.1414 | 131 | 117 | 131 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | * | 56.2500 | 39.1304 | 100.0000 | 99.3978 | 18 | 28 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | het | 56.5217 | 39.3939 | 100.0000 | 99.4522 | 13 | 20 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | homalt | 55.5556 | 38.4615 | 100.0000 | 98.9691 | 5 | 8 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | * | 58.6777 | 41.5205 | 100.0000 | 98.7278 | 71 | 100 | 71 | 0 | 0 | ||