PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20451-20500 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | homalt | 76.9231 | 66.6667 | 90.9091 | 80.3571 | 10 | 5 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | homalt | 76.9231 | 66.6667 | 90.9091 | 83.8235 | 10 | 5 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | homalt | 76.9231 | 66.6667 | 90.9091 | 84.5070 | 10 | 5 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | homalt | 66.6667 | 57.1429 | 80.0000 | 87.5000 | 4 | 3 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | homalt | 66.6667 | 57.1429 | 80.0000 | 90.0000 | 4 | 3 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | homalt | 71.4286 | 62.5000 | 83.3333 | 88.8889 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8504 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 97.3214 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.6522 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.4286 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 72 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_siren | homalt | 81.8182 | 70.0000 | 98.4375 | 70.2326 | 63 | 27 | 63 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | segdup | homalt | 82.5000 | 70.2128 | 100.0000 | 88.7681 | 33 | 14 | 31 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | I6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | * | hetalt | 0.0000 | 0.6889 | 0.0000 | 0.0000 | 6 | 865 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | HG002complexvar | hetalt | 0.0000 | 1.9355 | 0.0000 | 0.0000 | 6 | 304 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | HG002compoundhet | hetalt | 0.0000 | 0.6961 | 0.0000 | 0.0000 | 6 | 856 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9992 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9933 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | func_cds | homalt | 99.5466 | 99.0973 | 100.0000 | 21.7886 | 6916 | 63 | 6874 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||