PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 404 405 406 407 408 409 410 411 412 ... 1720 1721 » 20351-20400 / 86044 show all
gduggal-bwavard	INDEL	I1_5	map_l125_m0_e0	hetalt		0.0000	0.0000	0.0000	0	4	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l125_m1_e0	hetalt		0.0000	0.0000	0.0000	0	17	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l125_m2_e0	hetalt		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l125_m2_e1	hetalt		0.0000	0.0000	0.0000	0	19	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l150_m0_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	9	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l150_m2_e0	hetalt		0.0000	0.0000	0.0000	0	9	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l150_m2_e1	hetalt		0.0000	0.0000	0.0000	0	10	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l250_m0_e0	*	89.7959	91.6667	88.0000	98.4167	22	2	22	3	0	0.0000
gduggal-bwavard	INDEL	I1_5	map_l250_m0_e0	het	83.8710	86.6667	81.2500	98.8131	13	2	13	3	0	0.0000
gduggal-bwavard	INDEL	I1_5	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	96.1039	9	0	9	0	0
gduggal-bwavard	INDEL	I1_5	map_l250_m1_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-bwavard	INDEL	I1_5	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-bwavard	INDEL	I1_5	map_siren	hetalt	0.0000	0.8929	0.0000	0.0000	1	111	0	0	0
gduggal-bwavard	INDEL	I1_5	segdup	hetalt		0.0000	0.0000	0.0000	0	48	0	0	0
gduggal-bwavard	INDEL	I1_5	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I1_5	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I1_5	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I1_5	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-bwavard	INDEL	I1_5	tech_badpromoters	homalt	81.8182	69.2308	100.0000	43.7500	9	4	9	0	0
gduggal-bwavard	INDEL	I6_15	*	hetalt	0.0000	0.1520	0.0000	0.0000	13	8538	0	0	0
gduggal-bwavard	INDEL	I6_15	HG002complexvar	hetalt	0.0000	1.0630	0.0000	0.0000	13	1210	0	0	0
gduggal-bwavard	INDEL	I6_15	HG002compoundhet	hetalt	0.0000	0.1406	0.0000	0.0000	12	8525	0	0	0
gduggal-bwavard	INDEL	I6_15	decoy	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	decoy	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	func_cds	hetalt		0.0000	0.0000	0.0000	0	4	0	0	0
gduggal-bwavard	INDEL	I6_15	func_cds	homalt	88.8889	80.0000	100.0000	7.1429	12	3	13	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	0.0000	0.1887	0.0000	0.0000	1	529	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	0.2564	0.0000	0.0000	8	3112	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	0.0000	0.3403	0.0000	0.0000	12	3514	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	61	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	64.1509	47.2222	100.0000	59.5238	17	19	17	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	85	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	70.4225	54.3478	100.0000	51.0204	50	42	48	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	52	0	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	74.0741	58.8235	100.0000	50.0000	40	28	38	0	0
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	0.2755	0.0000	0.0000	1	362	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge