PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19901-19950 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8400 | 99.6805 | 100.0000 | 34.5560 | 312 | 1 | 339 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.4824 | 96.0000 | 96.9697 | 58.2278 | 24 | 1 | 32 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 100.0000 | 83.3333 | 85.3659 | 2 | 0 | 5 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 7.4074 | 22 | 1 | 25 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 81.8182 | 0 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 87.4852 | 80.3681 | 95.9854 | 91.2376 | 262 | 64 | 263 | 11 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4099 | 9 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.5517 | 95.4545 | 97.6744 | 89.1688 | 42 | 2 | 42 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.5517 | 95.4545 | 97.6744 | 90.1376 | 42 | 2 | 42 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.6292 | 95.5556 | 97.7273 | 90.1345 | 43 | 2 | 43 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 92.4426 | 88.7097 | 96.5035 | 91.8681 | 275 | 35 | 276 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 89.6323 | 85.4167 | 94.2857 | 93.1800 | 164 | 28 | 165 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.8326 | 93.8596 | 100.0000 | 87.1239 | 107 | 7 | 107 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8628 | 17 | 0 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.0079 | 94.1896 | 100.0000 | 84.1944 | 308 | 19 | 309 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.9873 | 19 | 0 | 19 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.1342 | 94.4282 | 100.0000 | 85.3437 | 322 | 19 | 322 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 19 | 0 | 19 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.1514 | 94.4606 | 100.0000 | 85.5551 | 324 | 19 | 324 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 91.8129 | 89.2045 | 94.5783 | 94.1487 | 157 | 19 | 157 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 87.2549 | 83.9623 | 90.8163 | 95.3356 | 89 | 17 | 89 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5909 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.4848 | 97.0149 | 100.0000 | 89.9691 | 65 | 2 | 65 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7143 | 9 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.1429 | 94.4444 | 100.0000 | 87.6802 | 187 | 11 | 188 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3115 | 9 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.1867 | 94.5274 | 100.0000 | 89.0230 | 190 | 11 | 191 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0317 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 97.2292 | 94.6078 | 100.0000 | 89.1011 | 193 | 11 | 194 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 98.6155 | 20 | 4 | 20 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 82.7586 | 80.0000 | 85.7143 | 98.8362 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 97.6048 | 8 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 88.1188 | 83.9623 | 92.7083 | 97.0525 | 89 | 17 | 89 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 82.4561 | 78.3333 | 87.0370 | 97.7070 | 47 | 13 | 47 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1982 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 94.9431 | 40 | 4 | 40 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 87.8505 | 83.1858 | 93.0693 | 97.3379 | 94 | 19 | 94 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 82.2581 | 77.2727 | 87.9310 | 97.8716 | 51 | 15 | 51 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.3488 | 91.1111 | 100.0000 | 95.5867 | 41 | 4 | 41 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 87.9630 | 83.3333 | 93.1373 | 97.3953 | 95 | 19 | 95 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 82.2581 | 77.2727 | 87.9310 | 97.9454 | 51 | 15 | 51 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6014 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.4545 | 91.3043 | 100.0000 | 95.5789 | 42 | 4 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_siren | hetalt | 97.2727 | 95.5357 | 99.0741 | 87.9867 | 107 | 5 | 107 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | het | 98.4123 | 97.7695 | 99.0637 | 96.0327 | 526 | 12 | 529 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.1889 | 45 | 3 | 46 | 0 | 0 | ||