PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
15001-15050 / 86044 show all
bgallagher-sentieonSNPtvmap_l250_m2_e1hetalt
88.8889
80.0000
100.0000
90.9091
41400
bgallagher-sentieonSNPtvmap_sirenhetalt
98.1132
96.2963
100.0000
69.5312
7837800
bgallagher-sentieonSNPtvsegduphet
99.2561
99.7541
98.7631
92.1695
5274135270660
0.0000
bgallagher-sentieonSNPtvsegduphetalt
100.0000
100.0000
100.0000
96.6667
70700
bgallagher-sentieonSNPtvsegdupwithalt*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvsegdupwithalthet
0.0000
100.0000
00000
bgallagher-sentieonSNPtvsegdupwithalthetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
55.5556
3213200
bgallagher-sentieonSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDEL**hetalt
0.0000
93.6165
0.0000
0.0000
236261611000
cchapple-customINDEL*HG002complexvarhetalt
0.0000
90.1865
0.0000
0.0000
3336363000
cchapple-customINDEL*HG002compoundhethetalt
0.0000
93.6418
0.0000
0.0000
235791601000
cchapple-customINDEL*decoy*
100.0000
100.0000
100.0000
99.9561
1001000
cchapple-customINDEL*decoyhet
100.0000
100.0000
100.0000
99.9628
60700
cchapple-customINDEL*decoyhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9250
30300
cchapple-customINDEL*func_cdshetalt
0.0000
80.0000
0.0000
0.0000
41000
cchapple-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
86.5063
0.0000
0.0000
3308516000
cchapple-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
94.7368
90.0000
100.0000
99.4547
1821800
cchapple-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.3674
1201500
cchapple-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
75.0000
60.0000
100.0000
99.6774
32300
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
95.5114
0.0000
0.0000
14725692000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
93.7863
0.0000
0.0000
156671038000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
86.8263
0.0000
0.0000
14522000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
93.7500
88.2353
100.0000
99.5292
1521500
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4286
1001300
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.7805
22200
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
96.1373
0.0000
0.0000
2249000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
95.4545
0.0000
0.0000
1266000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
86.2651
0.0000
0.0000
2349374000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.4790
30300
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.0000
20200
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
94.7368
10100
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
93.6792
0.0000
0.0000
12894870000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
95.4255
0.0000
0.0000
10597508000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
93.6075
0.0000
0.0000
13135897000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
93.7863
0.0000
0.0000
156671038000
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
95.4081
0.0000
0.0000
9994481000
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
74.7604
0.0000
0.0000
936316000
astatham-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
82.3529
1211200
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
86.6071
1501500