PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
14951-15000 / 86044 show all
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
91.8033
4014000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.8571
30300
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
86.8421
1501500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200*
98.0392
96.1538
100.0000
96.7866
2512500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200het
96.9697
94.1176
100.0000
97.2556
1611600
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.3368
90900
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.3939
4114110
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
97.2222
97.2222
97.2222
88.3117
3513510
0.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.1818
60600
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.5500
13092130900
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2143
10100
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvmap_l100_m0_e0hetalt
96.7742
93.7500
100.0000
68.7500
1511500
bgallagher-sentieonSNPtvmap_l100_m1_e0hetalt
97.5000
95.1220
100.0000
70.4545
3923900
bgallagher-sentieonSNPtvmap_l100_m2_e0hetalt
97.5610
95.2381
100.0000
72.7891
4024000
bgallagher-sentieonSNPtvmap_l100_m2_e1hetalt
97.6190
95.3488
100.0000
72.2973
4124100
bgallagher-sentieonSNPtvmap_l125_m0_e0hetalt
94.1176
88.8889
100.0000
77.1429
81800
bgallagher-sentieonSNPtvmap_l125_m1_e0hetalt
96.5517
93.3333
100.0000
71.4286
2822800
bgallagher-sentieonSNPtvmap_l125_m2_e0hetalt
96.5517
93.3333
100.0000
76.0684
2822800
bgallagher-sentieonSNPtvmap_l125_m2_e1hetalt
96.5517
93.3333
100.0000
76.0684
2822800
bgallagher-sentieonSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
88.8889
30300
bgallagher-sentieonSNPtvmap_l150_m1_e0hetalt
94.7368
90.0000
100.0000
76.3158
1821800
bgallagher-sentieonSNPtvmap_l150_m2_e0hetalt
94.7368
90.0000
100.0000
80.0000
1821800
bgallagher-sentieonSNPtvmap_l150_m2_e1hetalt
94.7368
90.0000
100.0000
80.0000
1821800
bgallagher-sentieonSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
bgallagher-sentieonSNPtvmap_l250_m1_e0hetalt
85.7143
75.0000
100.0000
91.8919
31300
bgallagher-sentieonSNPtvmap_l250_m2_e0hetalt
88.8889
80.0000
100.0000
90.9091
41400