PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14301-14350 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9201 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | func_cds | * | 99.3231 | 98.8764 | 99.7738 | 35.4745 | 440 | 5 | 441 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | func_cds | het | 99.0610 | 98.5981 | 99.5283 | 36.1446 | 211 | 3 | 211 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 75.0000 | 4 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | func_cds | homalt | 99.7783 | 99.5575 | 100.0000 | 30.7692 | 225 | 1 | 225 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.4324 | 90.0000 | 95.0000 | 99.2404 | 18 | 2 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 96.2963 | 100.0000 | 92.8571 | 99.0759 | 12 | 0 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9310 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6795 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 91.0816 | 88.2353 | 94.1176 | 99.3388 | 15 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.6522 | 100.0000 | 91.6667 | 99.1831 | 10 | 0 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7849 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7778 | 99.5565 | 100.0000 | 70.0067 | 1347 | 6 | 1341 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 95.7447 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 87.7419 | 78.1609 | 100.0000 | 99.8911 | 68 | 19 | 68 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 95.0000 | 90.4762 | 100.0000 | 99.9546 | 19 | 2 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.9580 | 90.4000 | 100.0000 | 36.3128 | 113 | 12 | 114 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.9610 | 47 | 0 | 47 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | het | 95.3831 | 92.0666 | 98.9474 | 74.9605 | 940 | 81 | 940 | 10 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6785 | 100.0000 | 99.3590 | 84.2105 | 155 | 0 | 155 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0823 | 74 | 0 | 74 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.6937 | 91.2281 | 96.2963 | 99.4858 | 52 | 5 | 52 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.3580 | 88.0952 | 94.8718 | 99.3893 | 37 | 5 | 37 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0596 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8100 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7147 | 99.4310 | 100.0000 | 46.1064 | 699 | 4 | 699 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8285 | 99.6575 | 100.0000 | 18.1180 | 582 | 2 | 583 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 23.1405 | 93 | 4 | 93 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 21 | 0 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.7368 | 94.7368 | 94.7368 | 80.8081 | 18 | 1 | 18 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.4564 | 23 | 1 | 23 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 71.1712 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 86.6953 | 62 | 2 | 62 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 72.7660 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.2211 | 63 | 2 | 63 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.0355 | 91.7808 | 98.5294 | 72.6908 | 67 | 6 | 67 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 87.1287 | 65 | 2 | 65 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 93.8667 | 46 | 1 | 46 | 0 | 0 | ||