PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
13001-13050 / 86044 show all
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.7458
13092130900
jli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5915
10100
jli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2759
10100
jli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
jli-customSNPtvmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
79.0698
90900
jli-customSNPtvmap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
74.1379
3003000
jli-customSNPtvmap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNPtvmap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
78.4173
3003000
jli-customSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
91.1765
30300
jli-customSNPtvmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
78.4946
2002000
jli-customSNPtvmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNPtvmap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
81.9820
2002000
jli-customSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
jli-customSNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
91.8367
40400
jli-customSNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
91.5254
50500
jli-customSNPtvsegduphet
99.3872
99.6974
99.0789
90.9422
5271165271490
0.0000
jli-customSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.1429
70700
jli-customSNPtvsegdupwithalt*
0.0000
100.0000
00000
jli-customSNPtvsegdupwithalthet
0.0000
100.0000
00000
jli-customSNPtvsegdupwithalthetalt
0.0000
100.0000
00000
jli-customSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
jli-customSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
54.9296
3213200
jli-customSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDEL*decoy*
100.0000
100.0000
100.0000
99.9727
1001000
jmaeng-gatkINDEL*decoyhet
100.0000
100.0000
100.0000
99.9809
60600
jmaeng-gatkINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8525
10100
jmaeng-gatkINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9340
30300
jmaeng-gatkINDEL*func_cds*
97.9088
99.5506
96.3203
53.9841
4432445170
0.0000
jmaeng-gatkINDEL*func_cdshet
95.9801
99.5327
92.6724
62.8205
2131215170
0.0000
jmaeng-gatkINDEL*func_cdshetalt
88.8889
80.0000
100.0000
50.0000
41400
jmaeng-gatkINDEL*func_cdshomalt
100.0000
100.0000
100.0000
39.2473
226022600
jmaeng-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.3631
2002000
jmaeng-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4138
1201200
jmaeng-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.6522
30300
jmaeng-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5117
50500
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
90.1316
82.0359
100.0000
64.7355
1373014000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.4367
1701700
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4903
1001000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.8276
30300
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5992
40400
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.5610
30300
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.6471
20200
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.2963
10100
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000