PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
12951-13000 / 86044 show all
jli-customSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
82.6087
1211200
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
88.6364
1501500
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4405
99.7754
99.1078
52.4231
133331333120
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.1274
99.6491
98.6111
54.0914
8523852120
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
48.9384
481048100
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5635
99.6780
99.4493
63.4150
216772167120
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3163
99.4953
99.1379
64.1052
138071380120
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
62.0839
786078600
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5146
99.6528
99.3767
68.2498
14355143590
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.2358
99.4530
99.0196
68.7861
909590990
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.2489
525052500
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
92.0319
4014000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.4311
502550210
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4652
99.1471
99.7854
85.6439
465446510
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.8776
30300
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7995
99.6662
99.9331
80.2093
14935149310
0.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
88.6364
1501500
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7731
99.5473
100.0000
61.6441
17598175900
jli-customSNPtvlowcmp_SimpleRepeat_diTR_51to200*
98.0392
96.1538
100.0000
96.8434
2512500
jli-customSNPtvlowcmp_SimpleRepeat_diTR_51to200het
96.9697
94.1176
100.0000
97.2835
1611600
jli-customSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.5224
90900
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.5522
4114110
0.0000
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
97.2222
97.2222
97.2222
88.3495
3513510
0.0000
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.5484
60600
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000