PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12651-12700 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 71.6418 | 60.0000 | 88.8889 | 84.4828 | 9 | 6 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 75.0000 | 66.6667 | 85.7143 | 78.7879 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 71.6418 | 60.0000 | 88.8889 | 86.3636 | 9 | 6 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 75.0000 | 66.6667 | 85.7143 | 80.5556 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 71.6418 | 60.0000 | 88.8889 | 86.5672 | 9 | 6 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 75.0000 | 66.6667 | 85.7143 | 80.5556 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 89.4737 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m0_e0 | * | 57.1429 | 50.0000 | 66.6667 | 87.5000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m0_e0 | het | 50.0000 | 50.0000 | 50.0000 | 80.0000 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 66.6667 | 54.5455 | 85.7143 | 85.4167 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 72.7273 | 66.6667 | 80.0000 | 80.0000 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 72.7273 | 66.6667 | 80.0000 | 81.4815 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 66.6667 | 54.5455 | 85.7143 | 86.7925 | 6 | 5 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 72.7273 | 66.6667 | 80.0000 | 81.4815 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 96.4286 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 92.3077 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 96.5517 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 92.8571 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 93.3333 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | het | 82.7586 | 73.4694 | 94.7368 | 66.9565 | 36 | 13 | 36 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 82.1429 | 10 | 6 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | * | 94.3820 | 89.3617 | 100.0000 | 89.7311 | 42 | 5 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | het | 93.3333 | 87.5000 | 100.0000 | 87.9781 | 21 | 3 | 22 | 0 | 0 | ||