PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12551-12600 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | * | 97.1429 | 94.4444 | 100.0000 | 94.5687 | 17 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | het | 95.2381 | 90.9091 | 100.0000 | 93.9394 | 10 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5055 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | * | 97.6744 | 95.4545 | 100.0000 | 93.9058 | 21 | 1 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | het | 96.2963 | 92.8571 | 100.0000 | 92.6316 | 13 | 1 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.3396 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | * | 97.6744 | 95.4545 | 100.0000 | 94.0860 | 21 | 1 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | het | 96.2963 | 92.8571 | 100.0000 | 92.8571 | 13 | 1 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5455 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | het | 97.8430 | 97.5000 | 98.1884 | 80.0145 | 273 | 7 | 271 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | homalt | 97.6500 | 96.1538 | 99.1935 | 78.0142 | 125 | 5 | 123 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | segdup | * | 96.5000 | 94.2408 | 98.8701 | 91.4327 | 180 | 11 | 175 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | segdup | het | 97.1910 | 96.7391 | 97.6471 | 92.1803 | 89 | 3 | 83 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 90.5702 | 42 | 7 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | segdup | homalt | 98.9899 | 98.0000 | 100.0000 | 90.6310 | 49 | 1 | 49 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 48.4848 | 17 | 0 | 17 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 10 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 42.8571 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.1672 | 58.9474 | 96.4286 | 75.9657 | 56 | 39 | 54 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 72.3623 | 57.5758 | 97.3684 | 68.0672 | 38 | 28 | 37 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 83.8710 | 72.2222 | 100.0000 | 64.4231 | 78 | 30 | 74 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 94.0476 | 88.7640 | 100.0000 | 63.5922 | 79 | 10 | 75 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.9293 | 86.7925 | 100.0000 | 60.7477 | 46 | 7 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 91.8919 | 85.0000 | 100.0000 | 57.5000 | 17 | 3 | 17 | 0 | 0 | ||