PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11201-11250 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.3361 | 23 | 1 | 23 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 74.4856 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 75.6863 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 75.3731 | 66 | 7 | 66 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 96.8421 | 97.8723 | 95.8333 | 94.7996 | 46 | 1 | 46 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 94.9153 | 96.5517 | 93.3333 | 95.6459 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.0465 | 18 | 1 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 89.4569 | 33 | 1 | 33 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.4126 | 18 | 1 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.5522 | 35 | 1 | 35 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 87.7551 | 18 | 2 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.4737 | 36 | 1 | 36 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 96.9697 | 100.0000 | 94.1176 | 95.5204 | 32 | 0 | 32 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 96.1268 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.2281 | 5 | 0 | 5 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7761 | 7 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 97.9592 | 98.6301 | 97.2973 | 94.2368 | 72 | 1 | 72 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 97.5000 | 100.0000 | 95.1220 | 95.6568 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.7526 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 89.7119 | 25 | 1 | 25 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1818 | 98.7805 | 97.5904 | 94.2640 | 81 | 1 | 81 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 95.5056 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6606 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.0000 | 27 | 1 | 27 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 97.6471 | 97.6471 | 97.6471 | 94.2490 | 83 | 2 | 83 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 95.5128 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.8571 | 8 | 1 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.7810 | 28 | 1 | 28 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.5612 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.6471 | 18 | 0 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.0969 | 11 | 0 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3636 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2121 | 5 | 0 | 5 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5113 | 22 | 0 | 22 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.8884 | 14 | 0 | 14 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0265 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 97.5798 | 22 | 0 | 22 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.9532 | 14 | 0 | 14 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_siren | hetalt | 96.3351 | 92.9293 | 100.0000 | 75.6614 | 92 | 7 | 92 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | segdup | het | 95.1872 | 96.7391 | 93.6842 | 96.4932 | 89 | 3 | 89 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.8898 | 43 | 6 | 43 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||