PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
10601-10650 / 86044 show all
jli-customINDELD1_5map_l250_m2_e1homalt
98.3051
96.6667
100.0000
94.3961
5825800
jli-customINDELD1_5map_sirenhetalt
91.7197
85.7143
98.6301
91.7045
72127210
0.0000
jli-customINDELD1_5segduphet
99.4935
99.4220
99.5652
94.2192
688468730
0.0000
jli-customINDELD1_5segduphetalt
99.0291
98.0769
100.0000
95.5932
5115200
jli-customINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9937
10100
jli-customINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9899
10100
jli-customINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
jli-customINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
jli-customINDELD1_5tech_badpromoters*
97.2973
94.7368
100.0000
48.5714
1811800
jli-customINDELD1_5tech_badpromotershet
93.3333
87.5000
100.0000
58.8235
71700
jli-customINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
jli-customINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
43.7500
90900
jli-customINDELD6_15decoy*
100.0000
100.0000
100.0000
99.8900
10100
jli-customINDELD6_15decoyhet
0.0000
100.0000
00000
jli-customINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1736
10100
jli-customINDELD6_15decoyhomalt
0.0000
100.0000
00000
jli-customINDELD6_15func_cds*
98.8235
97.6744
100.0000
52.8090
4214200
jli-customINDELD6_15func_cdshet
98.2456
96.5517
100.0000
47.1698
2812800
jli-customINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
jli-customINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
61.2903
1201200
jli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
96.1538
60600
jli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
96.7742
30300
jli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
jli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.6744
10100
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
94.5946
89.7436
100.0000
53.9474
3543500
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
76.5027
4304300
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.0803
40400
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.5904
20200
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
20200
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8665
100.0000
99.7333
58.1006
374037410
0.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8544
100.0000
99.7093
55.8974
343034310
0.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
89.4737
20200
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
90.0000
10100
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
66.6667
10100
jli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.6764
99.3548
100.0000
82.9268
154115400
jli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
81.0742
7407400
jli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
91.6059
85.9649
98.0392
99.3838
4985010
0.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
88.3117
80.9524
97.1429
99.2233
3483410
0.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.2437
90900
jli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.7287
60700
jli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.3558
98.7198
100.0000
43.9418
694969400
jli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3971
98.8014
100.0000
18.3616
577757800
jli-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
97.8947
95.8763
100.0000
21.1864
9349300
jli-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
34.3750
2102100
jli-customINDELD6_15map_l100_m0_e0hetalt
94.7368
94.7368
94.7368
81.1881
1811810
0.0000
jli-customINDELD6_15map_l100_m0_e0homalt
97.8723
95.8333
100.0000
88.6700
2312300
jli-customINDELD6_15map_l100_m1_e0hetalt
96.2406
94.1176
98.4615
71.9828
6446410
0.0000
jli-customINDELD6_15map_l100_m1_e0homalt
98.4127
96.8750
100.0000
84.5000
6226200