PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 197 198 199 200 201 202 203 204 205 ... 1720 1721 » 10001-10050 / 86044 show all
jpowers-varprowl	INDEL	D1_5	map_l100_m1_e0	hetalt		0.0000	0.0000	0.0000	0	47	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	48	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l100_m2_e1	hetalt	0.0000	1.9608	0.0000	0.0000	1	50	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l125_m0_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l125_m1_e0	hetalt		0.0000	0.0000	0.0000	0	13	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l125_m2_e0	hetalt		0.0000	0.0000	0.0000	0	15	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l125_m2_e1	hetalt		0.0000	0.0000	0.0000	0	15	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l150_m0_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	7	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l150_m2_e0	hetalt		0.0000	0.0000	0.0000	0	7	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l150_m2_e1	hetalt		0.0000	0.0000	0.0000	0	8	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l250_m0_e0	homalt	91.6667	84.6154	100.0000	97.0976	11	2	11	0	0
jpowers-varprowl	INDEL	D1_5	map_l250_m1_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
jpowers-varprowl	INDEL	D1_5	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
jpowers-varprowl	INDEL	D1_5	map_siren	hetalt		0.0000	0.0000	0.0000	0	84	0	0	0
jpowers-varprowl	INDEL	D1_5	segdup	hetalt	0.0000	1.9231	0.0000	0.0000	1	51	0	0	0
jpowers-varprowl	INDEL	D1_5	segdupwithalt	*	100.0000	100.0000	100.0000	99.9938	1	0	1	0	0
jpowers-varprowl	INDEL	D1_5	segdupwithalt	het	100.0000	100.0000	100.0000	99.9920	1	0	1	0	0
jpowers-varprowl	INDEL	D1_5	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D1_5	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
jpowers-varprowl	INDEL	D1_5	tech_badpromoters	homalt	80.0000	66.6667	100.0000	40.0000	6	3	6	0	0
jpowers-varprowl	INDEL	D6_15	*	hetalt	0.0000	0.3793	0.0000	0.0000	31	8143	0	0	0
jpowers-varprowl	INDEL	D6_15	HG002complexvar	hetalt	0.0000	1.5795	0.0000	0.0000	16	997	0	0	0
jpowers-varprowl	INDEL	D6_15	HG002compoundhet	hetalt	0.0000	0.3803	0.0000	0.0000	31	8120	0	0	0
jpowers-varprowl	INDEL	D6_15	decoy	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D6_15	func_cds	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
jpowers-varprowl	INDEL	D6_15	func_cds	homalt	80.0000	66.6667	100.0000	60.0000	8	4	8	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	0.0000	0.2959	0.0000	0.0000	7	2359	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	0.4110	0.0000	0.0000	28	6784	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	0.0000	0.3847	0.0000	0.0000	31	8028	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	39	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	66.6667	50.0000	100.0000	99.0521	2	2	2	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	98.8304	2	0	2	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	1.8182	0.0000	0.0000	1	54	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	3.0303	0.0000	0.0000	1	32	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	0.2342	0.0000	0.0000	4	1704	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	1	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	0.3515	0.0000	0.0000	25	7087	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	0.0000	0.3862	0.0000	0.0000	21	5417	0	0	0
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	0.3485	0.0000	0.0000	25	7149	0	0	0
jli-custom	INDEL	C16_PLUS	segdup	homalt		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge