PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
9201-9250 / 86044 show all
jmaeng-gatkSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
47.5410
3213200
jmaeng-gatkSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL**hetalt
0.0000
0.7648
0.0000
0.0000
19325044000
jpowers-varprowlINDEL*HG002complexvarhetalt
0.0000
2.7305
0.0000
0.0000
1013598000
jpowers-varprowlINDEL*HG002compoundhethetalt
0.0000
0.7625
0.0000
0.0000
19224988000
jpowers-varprowlINDEL*decoyhetalt
0.0000
0.0000
0.0000
01000
jpowers-varprowlINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9173
30300
jpowers-varprowlINDEL*func_cdshetalt
0.0000
0.0000
0.0000
05000
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.6015
0.0000
0.0000
233801000
jpowers-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
33.3333
20.0000
100.0000
99.8894
14100
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.9081
0.0000
0.0000
14015277000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.7543
0.0000
0.0000
12616579000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
1.7964
0.0000
0.0000
3164000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
40.0000
25.0000
100.0000
99.8862
13100
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
2.5751
0.0000
0.0000
6227000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
3.7879
0.0000
0.0000
5127000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.5876
0.0000
0.0000
162707000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.6030
0.0000
0.0000
8313681000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.6033
0.0000
0.0000
6711038000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.6271
0.0000
0.0000
8813944000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.7543
0.0000
0.0000
12616579000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.8401
0.0000
0.0000
8810387000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0799
0.0000
0.0000
11251000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.7477
0.0000
0.0000
4531000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
016000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
1.3050
0.0000
0.0000
352647000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.5858
0.0000
0.0000
71188000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
1.0834
0.0000
0.0000
10913000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
0125000
jpowers-varprowlINDEL*map_l100_m0_e0hetalt
0.0000
0.0000
0.0000
033000
jpowers-varprowlINDEL*map_l100_m1_e0hetalt
0.0000
0.8065
0.0000
0.0000
1123000
jpowers-varprowlINDEL*map_l100_m2_e0hetalt
0.0000
0.8000
0.0000
0.0000
1124000
jpowers-varprowlINDEL*map_l100_m2_e1hetalt
0.0000
1.5152
0.0000
0.0000
2130000
jpowers-varprowlINDEL*map_l125_m0_e0hetalt
0.0000
0.0000
0.0000
011000
jpowers-varprowlINDEL*map_l125_m1_e0hetalt
0.0000
0.0000
0.0000
040000
jpowers-varprowlINDEL*map_l125_m2_e0hetalt
0.0000
0.0000
0.0000
042000
jpowers-varprowlINDEL*map_l125_m2_e1hetalt
0.0000
0.0000
0.0000
043000
jpowers-varprowlINDEL*map_l150_m0_e0hetalt
0.0000
0.0000
0.0000
09000