PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
86001-86044 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 73.0113 | 70.9589 | 75.1858 | 71.6028 | 67020 | 27429 | 66956 | 22098 | 21721 | 98.2940 | |
| gduggal-snapvard | INDEL | D1_5 | * | het | 88.4948 | 98.0268 | 80.6523 | 58.4318 | 85844 | 1728 | 115949 | 27815 | 21843 | 78.5296 | |
| jpowers-varprowl | INDEL | * | HG002compoundhet | het | 23.2624 | 81.2408 | 13.5747 | 59.7974 | 3326 | 768 | 3502 | 22296 | 22169 | 99.4304 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 65.9821 | 77.5633 | 57.4100 | 52.3175 | 13821 | 3998 | 35430 | 26284 | 22200 | 84.4620 | |
| ciseli-custom | INDEL | * | HG002compoundhet | * | 10.2161 | 9.0332 | 11.7555 | 64.4950 | 2706 | 27250 | 3448 | 25883 | 22293 | 86.1299 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 55.4931 | 52.6341 | 58.6805 | 53.0447 | 22809 | 20526 | 37552 | 26442 | 22338 | 84.4792 | |
| ghariani-varprowl | INDEL | * | HG002compoundhet | het | 24.1441 | 85.8818 | 14.0465 | 61.8818 | 3516 | 578 | 3708 | 22690 | 22434 | 98.8717 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 68.5442 | 93.9928 | 53.9399 | 70.1347 | 28649 | 1831 | 28668 | 24480 | 22479 | 91.8260 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 68.5442 | 93.9928 | 53.9399 | 70.1347 | 28649 | 1831 | 28668 | 24480 | 22479 | 91.8260 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 59.6850 | 58.5729 | 60.8400 | 68.6799 | 38278 | 27073 | 38154 | 24558 | 22520 | 91.7013 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 59.6850 | 58.5729 | 60.8400 | 68.6799 | 38278 | 27073 | 38154 | 24558 | 22520 | 91.7013 | |
| ciseli-custom | INDEL | * | * | homalt | 84.6742 | 88.5829 | 81.0959 | 56.4739 | 110881 | 14291 | 110644 | 25792 | 22639 | 87.7753 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.8130 | 95.1115 | 55.1450 | 68.5922 | 28990 | 1490 | 29105 | 23674 | 22789 | 96.2617 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 69.8130 | 95.1115 | 55.1450 | 68.5922 | 28990 | 1490 | 29105 | 23674 | 22789 | 96.2617 | |
| gduggal-snapvard | INDEL | D1_5 | * | * | 87.8248 | 91.1601 | 84.7249 | 55.7284 | 133771 | 12972 | 160064 | 28858 | 22853 | 79.1912 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 56.7953 | 54.2639 | 59.5745 | 64.3309 | 35462 | 29889 | 35420 | 24035 | 23631 | 98.3191 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 56.7953 | 54.2639 | 59.5745 | 64.3309 | 35462 | 29889 | 35420 | 24035 | 23631 | 98.3191 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 59.6441 | 58.6663 | 60.6552 | 76.8269 | 38339 | 27012 | 38291 | 24838 | 23765 | 95.6800 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 59.6441 | 58.6663 | 60.6552 | 76.8269 | 38339 | 27012 | 38291 | 24838 | 23765 | 95.6800 | |
| gduggal-bwavard | INDEL | * | HG002compoundhet | het | 23.2106 | 89.3014 | 13.3387 | 58.9532 | 3656 | 438 | 3793 | 24643 | 23937 | 97.1351 | |
| gduggal-bwavard | INDEL | * | HG002compoundhet | * | 14.6648 | 14.4226 | 14.9152 | 58.8895 | 4321 | 25639 | 4329 | 24695 | 23984 | 97.1209 | |
| jpowers-varprowl | INDEL | * | HG002compoundhet | * | 14.0649 | 13.8284 | 14.3095 | 60.1145 | 4143 | 25817 | 4126 | 24708 | 24326 | 98.4539 | |
| ghariani-varprowl | INDEL | * | HG002compoundhet | * | 14.6445 | 14.5761 | 14.7135 | 73.0382 | 4367 | 25593 | 4334 | 25122 | 24561 | 97.7669 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 66.4735 | 78.6403 | 57.5670 | 62.2369 | 23968 | 6510 | 51344 | 37846 | 29268 | 77.3345 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 66.4735 | 78.6403 | 57.5670 | 62.2369 | 23968 | 6510 | 51344 | 37846 | 29268 | 77.3345 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 57.9193 | 56.2153 | 59.7299 | 62.4801 | 36735 | 28612 | 56563 | 38135 | 29523 | 77.4171 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 57.9193 | 56.2153 | 59.7299 | 62.4801 | 36735 | 28612 | 56563 | 38135 | 29523 | 77.4171 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 79.4795 | 89.6706 | 71.3684 | 71.4189 | 43284 | 4986 | 93686 | 37585 | 31016 | 82.5223 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 74.9320 | 73.6508 | 76.2585 | 70.2157 | 69561 | 24886 | 122035 | 37993 | 31398 | 82.6415 | |
| ciseli-custom | INDEL | * | * | * | 83.5453 | 82.5314 | 84.5844 | 60.0787 | 284352 | 60186 | 284718 | 51890 | 36584 | 70.5030 | |
| jpowers-varprowl | INDEL | * | * | het | 88.4014 | 94.9432 | 82.7031 | 60.8976 | 184316 | 9817 | 184394 | 38565 | 37886 | 98.2393 | |
| ghariani-varprowl | INDEL | * | * | het | 89.6326 | 98.5731 | 82.1789 | 64.2989 | 191361 | 2770 | 191449 | 41517 | 38150 | 91.8901 | |
| gduggal-bwavard | INDEL | * | * | het | 89.1538 | 98.0771 | 81.7188 | 63.1804 | 190400 | 3733 | 190127 | 42533 | 38764 | 91.1386 | |
| gduggal-bwavard | INDEL | * | * | * | 87.3464 | 87.1769 | 87.5166 | 58.1126 | 300361 | 44181 | 299341 | 42698 | 38856 | 91.0019 | |
| jpowers-varprowl | INDEL | * | * | * | 86.4885 | 85.2886 | 87.7226 | 56.7888 | 293855 | 50687 | 293627 | 41095 | 40121 | 97.6299 | |
| ghariani-varprowl | INDEL | * | * | * | 87.2025 | 87.3272 | 87.0781 | 72.0067 | 300877 | 43663 | 300632 | 44612 | 40345 | 90.4353 | |
| gduggal-snapvard | INDEL | * | * | het | 84.4835 | 93.2561 | 77.2195 | 60.6809 | 181038 | 13092 | 228131 | 67301 | 50370 | 74.8429 | |
| gduggal-snapvard | INDEL | * | * | * | 83.0264 | 83.4429 | 82.6139 | 57.1178 | 287491 | 57045 | 327755 | 68976 | 51941 | 75.3030 | |
| anovak-vg | INDEL | I1_5 | * | homalt | 66.3251 | 96.0879 | 50.6397 | 46.1343 | 58064 | 2364 | 59291 | 57793 | 55650 | 96.2919 | |
| anovak-vg | INDEL | I1_5 | * | * | 54.8287 | 54.8578 | 54.7996 | 53.4671 | 82651 | 68013 | 84844 | 69982 | 59671 | 85.2662 | |
| anovak-vg | INDEL | * | * | homalt | 74.8405 | 92.1212 | 63.0190 | 50.1342 | 115310 | 9862 | 117434 | 68913 | 64807 | 94.0418 | |
| anovak-vg | INDEL | * | * | * | 70.4960 | 69.7491 | 71.2591 | 54.1876 | 240315 | 104227 | 248606 | 100270 | 81436 | 81.2167 | |