PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
86001-86044 / 86044 show all
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
73.0113
70.9589
75.1858
71.6028
6702027429669562209821721
98.2940
gduggal-snapvardINDELD1_5*het
88.4948
98.0268
80.6523
58.4318
8584417281159492781521843
78.5296
jpowers-varprowlINDEL*HG002compoundhethet
23.2624
81.2408
13.5747
59.7974
332676835022229622169
99.4304
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
65.9821
77.5633
57.4100
52.3175
138213998354302628422200
84.4620
ciseli-customINDEL*HG002compoundhet*
10.2161
9.0332
11.7555
64.4950
27062725034482588322293
86.1299
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
55.4931
52.6341
58.6805
53.0447
2280920526375522644222338
84.4792
ghariani-varprowlINDEL*HG002compoundhethet
24.1441
85.8818
14.0465
61.8818
351657837082269022434
98.8717
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
68.5442
93.9928
53.9399
70.1347
286491831286682448022479
91.8260
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
68.5442
93.9928
53.9399
70.1347
286491831286682448022479
91.8260
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
ciseli-customINDEL**homalt
84.6742
88.5829
81.0959
56.4739
110881142911106442579222639
87.7753
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
gduggal-snapvardINDELD1_5**
87.8248
91.1601
84.7249
55.7284
133771129721600642885822853
79.1912
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
56.7953
54.2639
59.5745
64.3309
3546229889354202403523631
98.3191
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
56.7953
54.2639
59.5745
64.3309
3546229889354202403523631
98.3191
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6441
58.6663
60.6552
76.8269
3833927012382912483823765
95.6800
gduggal-bwavardINDEL*HG002compoundhethet
23.2106
89.3014
13.3387
58.9532
365643837932464323937
97.1351
gduggal-bwavardINDEL*HG002compoundhet*
14.6648
14.4226
14.9152
58.8895
43212563943292469523984
97.1209
jpowers-varprowlINDEL*HG002compoundhet*
14.0649
13.8284
14.3095
60.1145
41432581741262470824326
98.4539
ghariani-varprowlINDEL*HG002compoundhet*
14.6445
14.5761
14.7135
73.0382
43672559343342512224561
97.7669
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
66.4735
78.6403
57.5670
62.2369
239686510513443784629268
77.3345
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
66.4735
78.6403
57.5670
62.2369
239686510513443784629268
77.3345
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
57.9193
56.2153
59.7299
62.4801
3673528612565633813529523
77.4171
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
57.9193
56.2153
59.7299
62.4801
3673528612565633813529523
77.4171
gduggal-snapvardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
79.4795
89.6706
71.3684
71.4189
432844986936863758531016
82.5223
gduggal-snapvardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
74.9320
73.6508
76.2585
70.2157
69561248861220353799331398
82.6415
ciseli-customINDEL***
83.5453
82.5314
84.5844
60.0787
284352601862847185189036584
70.5030
jpowers-varprowlINDEL**het
88.4014
94.9432
82.7031
60.8976
18431698171843943856537886
98.2393
ghariani-varprowlINDEL**het
89.6326
98.5731
82.1789
64.2989
19136127701914494151738150
91.8901
gduggal-bwavardINDEL**het
89.1538
98.0771
81.7188
63.1804
19040037331901274253338764
91.1386
gduggal-bwavardINDEL***
87.3464
87.1769
87.5166
58.1126
300361441812993414269838856
91.0019
jpowers-varprowlINDEL***
86.4885
85.2886
87.7226
56.7888
293855506872936274109540121
97.6299
ghariani-varprowlINDEL***
87.2025
87.3272
87.0781
72.0067
300877436633006324461240345
90.4353
gduggal-snapvardINDEL**het
84.4835
93.2561
77.2195
60.6809
181038130922281316730150370
74.8429
gduggal-snapvardINDEL***
83.0264
83.4429
82.6139
57.1178
287491570453277556897651941
75.3030
anovak-vgINDELI1_5*homalt
66.3251
96.0879
50.6397
46.1343
580642364592915779355650
96.2919
anovak-vgINDELI1_5**
54.8287
54.8578
54.7996
53.4671
8265168013848446998259671
85.2662
anovak-vgINDEL**homalt
74.8405
92.1212
63.0190
50.1342
11531098621174346891364807
94.0418
anovak-vgINDEL***
70.4960
69.7491
71.2591
54.1876
24031510422724860610027081436
81.2167